Expression of 1-1-4.1.2.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06382 | 0.697 |
27DAP/17DAP | 1.16843 | 0.849 |
39DAP/27DAP | 1.06346 | 0.915 |
41DAP/39DAP | 0.98047 | 0.89 |
42DAP/41DAP | 1.35346 | 0.599 |
43DAP/42DAP | 0.91224 | 0.77 |
47DAP/43DAP | 1.21181 | 0.689 |
52DAP/47DAP | 1.24618 | 0.649 |
57DAP/52DAP | 0.96367 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08777 | 0.207 |
17DAP/reference | 1.0949 | 0.042 |
27DAP/reference | 1.04554 | 0.446 |
39DAP/reference | 1.02034 | 0.615 |
41DAP/reference | 1.02044 | 0.667 |
42DAP/reference | 1.0853 | 0.035 |
43DAP/reference | 1.00956 | 0.928 |
47DAP/reference | 1.03256 | 0.752 |
52DAP/reference | 1.06415 | 0.43 |
57DAP/reference | 0.91441 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96693 | 0.613 |
27DAP/17DAP | 1.08721 | 0.587 |
39DAP/27DAP | 1.00618 | 0.845 |
41DAP/39DAP | 1.09119 | 0.69 |
42DAP/41DAP | 1.00426 | 0.924 |
43DAP/42DAP | 0.95224 | 0.665 |
47DAP/43DAP | 0.94572 | 0.701 |
52DAP/47DAP | 0.94964 | 0.719 |
57DAP/52DAP | 1.01558 | 0.933 |
57DAP/7DAP | 1.13714 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00581 | 1 |
17DAP/reference | 0.97199 | 0.253 |
27DAP/reference | 0.87575 | 0.055 |
39DAP/reference | 1.05089 | 0.073 |
41DAP/reference | 1.09235 | 0.117 |
42DAP/reference | 1.07204 | 0.076 |
43DAP/reference | 1.03541 | 0.707 |
47DAP/reference | 1.03055 | 0.791 |
52DAP/reference | 0.9571 | 0.033 |
57DAP/reference | 1.00051 | 0.67 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08299 | 0.443 |
17DAP/reference | 1.20683 | 0.011 |
27DAP/reference | 1.16461 | 0.133 |
39DAP/reference | 1.18616 | 0.106 |
41DAP/reference | 1.02513 | 1 |
42DAP/reference | 1.1739 | 0.05 |
43DAP/reference | 1.13739 | 0.124 |
47DAP/reference | 1.07827 | 0.04 |
52DAP/reference | 1.10235 | 0.074 |
57DAP/reference | 1.10119 | 0.182 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9248 | 0.29 |
17DAP/reference | 1.05557 | 0.62 |
27DAP/reference | 0.87104 | 0.119 |
39DAP/reference | 0.84616 | 0.037 |
41DAP/reference | 0.91754 | 0.05 |
42DAP/reference | 0.95483 | 0.361 |
43DAP/reference | 1.09966 | 0.515 |
47DAP/reference | 1.04106 | 0.901 |
52DAP/reference | 0.96964 | 0.663 |
57DAP/reference | 2.36529 | 0.444 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00801 | 0.966 |
26DAP/20DAP | 0.90185 | 0.205 |
34DAP/26DAP | 1.0353 | 1 |
51DAP/34DAP | 0.85 | 0.246 |
52DAP/51DAP | 0.97253 | 1 |
53DAP/52DAP | 0.94002 | 0.52 |
55DAP/53DAP | 0.97234 | 0.775 |
57DAP/55DAP | 1.17688 | 0.61 |
62DAP/57DAP | 0.82961 | |
68DAP/62DAP | 0.97704 | 0.863 |
68DAP/14DAP | 0.93069 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04434 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.07118 | 1 |
Mature Green Tomato/Ripe Tomato | 1.06629 | 1 |
Immature Eggplant/Mature Eggplant | 1.0258 | 1 |
Ripe Pepper/Ripe Tomato | 0.65934 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.51259 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.89945 | 0.883 |
1-1-2/M82 | 1.05583 | |
12-2/M82 | 1.03439 | 1 |
12-4/M82 | 0.96296 | 1 |
1-3/M82 | 0.92822 | 0.378 |
2-1-1/M82 | 1.0469 | 0.764 |
2-1/M82 | 1.21642 | 1 |
2-6/M82 | 0.9756 | 1 |
3-2/M82 | 0.94365 | |
4-1-1/M82 | 0.97524 | 1 |
4-1/M82 | 1.01155 | |
4-3-2/M82 | 0.86944 | 0.487 |
4-3/M82 | 0.98971 | 1 |
5-3/M82 | 0.99978 | 1 |
6-2/M82 | 1.07953 | 1 |
6-3/M82 | 1.0384 | 1 |
7-1/M82 | 1.13247 | 1 |
7-2/M82 | 0.97213 | 0.881 |
9-3-2/M82 | 0.79907 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.78792 | 0.321 |
IL2-6/WTpooled | 1.33338 | 0.419 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.92415 | 0.418 |
IL12-4/WTpooled | 0.85623 | 1 |
IL1-4/WTpooled | 0.94214 | 1 |
WT/WTpooled | 0.90834 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1359 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0569 | 0.921 |
DC3000/delta hrp 6h | 0.81258 | 0.95 |
DC3000/delta hrp 12h | 1.15764 | 1 |
DC3000/delta hrp 24h | 1.01174 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.20317 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.07052 | 0.457 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04026 | 1 |
Exp 36h | 1.09965 | 0.693 |
Exp 60h | 1.11371 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00505 | 1 |
Var 0h | 0.96171 | 1 |
Var 12h I row2-row1 | 1.04624 | 0.654 |
Var 12h NI row2-row1 | 0.87098 | 0.82 |
Var 36h I row2-row1 | 1.13413 | 0.742 |
Var 36h NI row2-row1 | 0.81868 | 0.549 |
Var 60h I row2-row1 | 0.83721 | |
Var 60h NI row2-row1 | 1.3441 | 0.904 |
Time course 0hI-0hNI | 0.99287 | 1 |
Time course 12hI-12hNI | 1.08692 | 0.63 |
Time course 36hI-36hNI | 0.99215 | 0.708 |
Time course 60hI-60hNI | 1.08562 | 0.137 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90885 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 1.38805 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.30345 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02267 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1416 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86429 | 1 |
Manapal/WT (break) | 1.20694 | 1 |
Manapal/WT (red) | 1.38197 | 0.222 |
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