Expression of 1-1-4.1.2.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.063820.697
27DAP/17DAP1.168430.849
39DAP/27DAP1.063460.915
41DAP/39DAP0.980470.89
42DAP/41DAP1.353460.599
43DAP/42DAP0.912240.77
47DAP/43DAP1.211810.689
52DAP/47DAP1.246180.649
57DAP/52DAP0.963670.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.087770.207
17DAP/reference1.09490.042
27DAP/reference1.045540.446
39DAP/reference1.020340.615
41DAP/reference1.020440.667
42DAP/reference1.08530.035
43DAP/reference1.009560.928
47DAP/reference1.032560.752
52DAP/reference1.064150.43
57DAP/reference0.914410.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.966930.613
27DAP/17DAP1.087210.587
39DAP/27DAP1.006180.845
41DAP/39DAP1.091190.69
42DAP/41DAP1.004260.924
43DAP/42DAP0.952240.665
47DAP/43DAP0.945720.701
52DAP/47DAP0.949640.719
57DAP/52DAP1.015580.933
57DAP/7DAP1.137141

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.005811
17DAP/reference0.971990.253
27DAP/reference0.875750.055
39DAP/reference1.050890.073
41DAP/reference1.092350.117
42DAP/reference1.072040.076
43DAP/reference1.035410.707
47DAP/reference1.030550.791
52DAP/reference0.95710.033
57DAP/reference1.000510.67

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.082990.443
17DAP/reference1.206830.011
27DAP/reference1.164610.133
39DAP/reference1.186160.106
41DAP/reference1.025131
42DAP/reference1.17390.05
43DAP/reference1.137390.124
47DAP/reference1.078270.04
52DAP/reference1.102350.074
57DAP/reference1.101190.182

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92480.29
17DAP/reference1.055570.62
27DAP/reference0.871040.119
39DAP/reference0.846160.037
41DAP/reference0.917540.05
42DAP/reference0.954830.361
43DAP/reference1.099660.515
47DAP/reference1.041060.901
52DAP/reference0.969640.663
57DAP/reference2.365290.444

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.008010.966
26DAP/20DAP0.901850.205
34DAP/26DAP1.03531
51DAP/34DAP0.850.246
52DAP/51DAP0.972531
53DAP/52DAP0.940020.52
55DAP/53DAP0.972340.775
57DAP/55DAP1.176880.61
62DAP/57DAP0.82961
68DAP/62DAP0.977040.863
68DAP/14DAP0.930690.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.044340.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.071181
Mature Green Tomato/Ripe Tomato1.066291
Immature Eggplant/Mature Eggplant1.02581
Ripe Pepper/Ripe Tomato0.659340.293
Mature Eggplant/Ripe Tomato0.512590.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.899450.883
1-1-2/M821.05583
12-2/M821.034391
12-4/M820.962961
1-3/M820.928220.378
2-1-1/M821.04690.764
2-1/M821.216421
2-6/M820.97561
3-2/M820.94365
4-1-1/M820.975241
4-1/M821.01155
4-3-2/M820.869440.487
4-3/M820.989711
5-3/M820.999781
6-2/M821.079531
6-3/M821.03841
7-1/M821.132471
7-2/M820.972130.881
9-3-2/M820.799070.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.787920.321
IL2-6/WTpooled1.333380.419
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.924150.418
IL12-4/WTpooled0.856231
IL1-4/WTpooled0.942141
WT/WTpooled0.908341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.13590.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.05690.921
DC3000/delta hrp 6h0.812580.95
DC3000/delta hrp 12h1.157641
DC3000/delta hrp 24h1.011740.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.203170.333
DC3000 delta B/DC3000 delta AB1.070520.457

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.040261
Exp 36h1.099650.693
Exp 60h1.113710.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.005051
Var 0h0.961711
Var 12h I row2-row11.046240.654
Var 12h NI row2-row10.870980.82
Var 36h I row2-row11.134130.742
Var 36h NI row2-row10.818680.549
Var 60h I row2-row10.83721
Var 60h NI row2-row11.34410.904
Time course 0hI-0hNI0.992871
Time course 12hI-12hNI1.086920.63
Time course 36hI-36hNI0.992150.708
Time course 60hI-60hNI1.085620.137

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.908850.428
transgenic ySAMdc/azygous control (breaker)1.388050.178
transgenic ySAMdc/azygous control (red)1.303450.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.022670.317

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.14161

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.864291
Manapal/WT (break)1.206941
Manapal/WT (red)1.381970.222