Expression of 1-1-4.1.2.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.16920.534
27DAP/17DAP1.130070.841
39DAP/27DAP1.146080.606
41DAP/39DAP0.919350.659
42DAP/41DAP0.743621
43DAP/42DAP0.952730.877
47DAP/43DAP1.063960.659
52DAP/47DAP0.970010.873
57DAP/52DAP0.963280.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.99060.661
17DAP/reference1.031720.427
27DAP/reference1.0060.981
39DAP/reference1.035230.243
41DAP/reference1.045650.667
42DAP/reference0.966930.115
43DAP/reference1.053740.217
47DAP/reference0.973720.279
52DAP/reference0.991240.636
57DAP/reference0.874680.056

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.045120.812
27DAP/17DAP1.212880.231
39DAP/27DAP0.972340.812
41DAP/39DAP0.854610.08
42DAP/41DAP1.055310.861
43DAP/42DAP0.727440.022
47DAP/43DAP1.015860.95
52DAP/47DAP1.005221
57DAP/52DAP0.936670.501
57DAP/7DAP1.056871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.945360.203
17DAP/reference0.930340.124
27DAP/reference0.875080.028
39DAP/reference0.980330.307
41DAP/reference0.988380.449
42DAP/reference0.988350.415
43DAP/reference0.970390.11
47DAP/reference0.991381
52DAP/reference1.016991
57DAP/reference0.992680.589

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.073590.085
17DAP/reference1.020490.69
27DAP/reference1.022520.888
39DAP/reference1.042880.556
41DAP/reference1.043570.657
42DAP/reference0.971720.392
43DAP/reference1.000070.846
47DAP/reference0.928020.027
52DAP/reference1.043450.3
57DAP/reference1.093380.018

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931430.214
17DAP/reference0.985370.681
27DAP/reference0.984870.516
39DAP/reference0.883520.015
41DAP/reference0.997260.826
42DAP/reference0.928170.108
43DAP/reference0.92880.237
47DAP/reference0.974940.434
52DAP/reference0.909460.247
57DAP/reference0.821320.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.971621
26DAP/20DAP1.00661
34DAP/26DAP1.080210.819
51DAP/34DAP1.199580.326
52DAP/51DAP0.958591
53DAP/52DAP0.980390.897
55DAP/53DAP0.968670.761
57DAP/55DAP1.16920.643
62DAP/57DAPN/AN/A
68DAP/62DAP1.073180.912
68DAP/14DAP0.89170.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.880290.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.724850.201
Mature Green Tomato/Ripe Tomato1.623750.02
Immature Eggplant/Mature Eggplant1.108720.288
Ripe Pepper/Ripe Tomato1.338641
Mature Eggplant/Ripe Tomato0.674430.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.910350.944
1-1-2/M821.021241
12-2/M82N/AN/A
12-4/M821.008451
1-3/M821.19007
2-1-1/M82N/AN/A
2-1/M821.0223
2-6/M821.047541
3-2/M820.96099
4-1-1/M820.87511
4-1/M82N/AN/A
4-3-2/M820.944031
4-3/M820.882050.421
5-3/M821.023510.572
6-2/M82N/AN/A
6-3/M820.79925
7-1/M821.027591
7-2/M821.29729
9-3-2/M821.086411

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.734340.358
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.122411
IL12-4/WTpooled0.805040.566
IL1-4/WTpooled1.2218
WT/WTpooled0.967131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.02651

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.946221
DC3000/delta hrp 6h0.94840.95
DC3000/delta hrp 12h0.973641
DC3000/delta hrp 24h1.007211

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.565120.053
DC3000 delta B/DC3000 delta AB1.060590.579

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.01721
Exp 36h1.100921
Exp 60h1.427040.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.927931
Var 0h1.424360.936
Var 12h I row2-row10.920240.565
Var 12h NI row2-row10.886140.494
Var 36h I row2-row11.23160.742
Var 36h NI row2-row10.900331
Var 60h I row2-row11.051931
Var 60h NI row2-row10.935740.932
Time course 0hI-0hNI0.968660.738
Time course 12hI-12hNI0.953470.451
Time course 36hI-36hNI0.922410.119
Time course 60hI-60hNI0.702380.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.957380.485
transgenic ySAMdc/azygous control (breaker)0.946040.49
transgenic ySAMdc/azygous control (red)0.977391

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.059280.142

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.767980.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.992381
Manapal/WT (break)1.007641
Manapal/WT (red)1.133931