Expression of 1-1-4.1.2.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1692 | 0.534 |
27DAP/17DAP | 1.13007 | 0.841 |
39DAP/27DAP | 1.14608 | 0.606 |
41DAP/39DAP | 0.91935 | 0.659 |
42DAP/41DAP | 0.74362 | 1 |
43DAP/42DAP | 0.95273 | 0.877 |
47DAP/43DAP | 1.06396 | 0.659 |
52DAP/47DAP | 0.97001 | 0.873 |
57DAP/52DAP | 0.96328 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9906 | 0.661 |
17DAP/reference | 1.03172 | 0.427 |
27DAP/reference | 1.006 | 0.981 |
39DAP/reference | 1.03523 | 0.243 |
41DAP/reference | 1.04565 | 0.667 |
42DAP/reference | 0.96693 | 0.115 |
43DAP/reference | 1.05374 | 0.217 |
47DAP/reference | 0.97372 | 0.279 |
52DAP/reference | 0.99124 | 0.636 |
57DAP/reference | 0.87468 | 0.056 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04512 | 0.812 |
27DAP/17DAP | 1.21288 | 0.231 |
39DAP/27DAP | 0.97234 | 0.812 |
41DAP/39DAP | 0.85461 | 0.08 |
42DAP/41DAP | 1.05531 | 0.861 |
43DAP/42DAP | 0.72744 | 0.022 |
47DAP/43DAP | 1.01586 | 0.95 |
52DAP/47DAP | 1.00522 | 1 |
57DAP/52DAP | 0.93667 | 0.501 |
57DAP/7DAP | 1.05687 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94536 | 0.203 |
17DAP/reference | 0.93034 | 0.124 |
27DAP/reference | 0.87508 | 0.028 |
39DAP/reference | 0.98033 | 0.307 |
41DAP/reference | 0.98838 | 0.449 |
42DAP/reference | 0.98835 | 0.415 |
43DAP/reference | 0.97039 | 0.11 |
47DAP/reference | 0.99138 | 1 |
52DAP/reference | 1.01699 | 1 |
57DAP/reference | 0.99268 | 0.589 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07359 | 0.085 |
17DAP/reference | 1.02049 | 0.69 |
27DAP/reference | 1.02252 | 0.888 |
39DAP/reference | 1.04288 | 0.556 |
41DAP/reference | 1.04357 | 0.657 |
42DAP/reference | 0.97172 | 0.392 |
43DAP/reference | 1.00007 | 0.846 |
47DAP/reference | 0.92802 | 0.027 |
52DAP/reference | 1.04345 | 0.3 |
57DAP/reference | 1.09338 | 0.018 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93143 | 0.214 |
17DAP/reference | 0.98537 | 0.681 |
27DAP/reference | 0.98487 | 0.516 |
39DAP/reference | 0.88352 | 0.015 |
41DAP/reference | 0.99726 | 0.826 |
42DAP/reference | 0.92817 | 0.108 |
43DAP/reference | 0.9288 | 0.237 |
47DAP/reference | 0.97494 | 0.434 |
52DAP/reference | 0.90946 | 0.247 |
57DAP/reference | 0.82132 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97162 | 1 |
26DAP/20DAP | 1.0066 | 1 |
34DAP/26DAP | 1.08021 | 0.819 |
51DAP/34DAP | 1.19958 | 0.326 |
52DAP/51DAP | 0.95859 | 1 |
53DAP/52DAP | 0.98039 | 0.897 |
55DAP/53DAP | 0.96867 | 0.761 |
57DAP/55DAP | 1.1692 | 0.643 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.07318 | 0.912 |
68DAP/14DAP | 0.8917 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.88029 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72485 | 0.201 |
Mature Green Tomato/Ripe Tomato | 1.62375 | 0.02 |
Immature Eggplant/Mature Eggplant | 1.10872 | 0.288 |
Ripe Pepper/Ripe Tomato | 1.33864 | 1 |
Mature Eggplant/Ripe Tomato | 0.67443 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.91035 | 0.944 |
1-1-2/M82 | 1.02124 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.00845 | 1 |
1-3/M82 | 1.19007 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 1.0223 | |
2-6/M82 | 1.04754 | 1 |
3-2/M82 | 0.96099 | |
4-1-1/M82 | 0.87511 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.94403 | 1 |
4-3/M82 | 0.88205 | 0.421 |
5-3/M82 | 1.02351 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.79925 | |
7-1/M82 | 1.02759 | 1 |
7-2/M82 | 1.29729 | |
9-3-2/M82 | 1.08641 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.73434 | 0.358 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.12241 | 1 |
IL12-4/WTpooled | 0.80504 | 0.566 |
IL1-4/WTpooled | 1.2218 | |
WT/WTpooled | 0.96713 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0265 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94622 | 1 |
DC3000/delta hrp 6h | 0.9484 | 0.95 |
DC3000/delta hrp 12h | 0.97364 | 1 |
DC3000/delta hrp 24h | 1.00721 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.56512 | 0.053 |
DC3000 delta B/DC3000 delta AB | 1.06059 | 0.579 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0172 | 1 |
Exp 36h | 1.10092 | 1 |
Exp 60h | 1.42704 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.92793 | 1 |
Var 0h | 1.42436 | 0.936 |
Var 12h I row2-row1 | 0.92024 | 0.565 |
Var 12h NI row2-row1 | 0.88614 | 0.494 |
Var 36h I row2-row1 | 1.2316 | 0.742 |
Var 36h NI row2-row1 | 0.90033 | 1 |
Var 60h I row2-row1 | 1.05193 | 1 |
Var 60h NI row2-row1 | 0.93574 | 0.932 |
Time course 0hI-0hNI | 0.96866 | 0.738 |
Time course 12hI-12hNI | 0.95347 | 0.451 |
Time course 36hI-36hNI | 0.92241 | 0.119 |
Time course 60hI-60hNI | 0.70238 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95738 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 0.94604 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.97739 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05928 | 0.142 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.76798 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.99238 | 1 |
Manapal/WT (break) | 1.00764 | 1 |
Manapal/WT (red) | 1.13393 | 1 |
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