Expression of 1-1-4.1.2.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.298840.381
27DAP/17DAP1.201650.804
39DAP/27DAP0.849820.482
41DAP/39DAP1.343720.649
42DAP/41DAP0.781181
43DAP/42DAP1.14810.772
47DAP/43DAP1.21130.448
52DAP/47DAP0.770730.436
57DAP/52DAP1.156190.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.870250.051
17DAP/reference0.726550.008
27DAP/reference1.082710.299
39DAP/reference0.777570.014
41DAP/reference0.62950.008
42DAP/reference0.987210.413
43DAP/reference0.896880.118
47DAP/reference1.220180.223
52DAP/reference1.965840.014
57DAP/reference1.373870.076

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.282650.365
27DAP/17DAP0.91982
39DAP/27DAP0.795740.377
41DAP/39DAP1.150380.876
42DAP/41DAP1.110970.947
43DAP/42DAP1.169350.072
47DAP/43DAP1.091610.884
52DAP/47DAP0.985260.913
57DAP/52DAP1.421990.234
57DAP/7DAP1.27661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.107380.813
17DAP/reference0.904850.253
27DAP/reference1.313780.018
39DAP/reference1.123340.634
41DAP/reference1.020880.848
42DAP/reference1.039981
43DAP/reference0.869130.22
47DAP/reference1.273680.298
52DAP/reference1.098340.375
57DAP/reference1.023680.831

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.869670.129
17DAP/reference0.79660.015
27DAP/reference0.988020.598
39DAP/reference1.113790.556
41DAP/reference1.247240.068
42DAP/reference1.07260.934
43DAP/reference0.950230.468
47DAP/reference0.796290.021
52DAP/reference1.261760.038
57DAP/reference0.825970.156

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.895330.335
17DAP/reference1.031310.934
27DAP/reference1.238270.023
39DAP/reference1.060580.889
41DAP/reference0.927170.512
42DAP/reference1.4740.045
43DAP/reference1.700280.013
47DAP/reference0.872830.125
52DAP/reference1.028151
57DAP/reference1.519220.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.250951
26DAP/20DAPN/AN/A
34DAP/26DAP0.858010.803
51DAP/34DAP1.285760.775
52DAP/51DAP1.456030.094
53DAP/52DAP2.087290.097
55DAP/53DAP1.035830.964
57DAP/55DAP0.930860.694
62DAP/57DAP1.22908
68DAP/62DAP1.530210.672
68DAP/14DAP4.166850.063

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.083410.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.380671
IL2-6/WTpooled1.70867
IL7-5/WTpooled1.691191
IL7-3/WTpooled1.09861
IL12-4/WTpooled1.368960.695
IL1-4/WTpooled1.048381
WT/WTpooled1.071951

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.80170.226

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.245040.715
Var 0h1.01769
Var 12h I row2-row10.943930.948
Var 12h NI row2-row11.18443
Var 36h I row2-row11.256590.339
Var 36h NI row2-row11.64353
Var 60h I row2-row10.86888
Var 60h NI row2-row14.25074
Time course 0hI-0hNI0.98380.981
Time course 12hI-12hNI1.382710.615
Time course 36hI-36hNI0.721060.323
Time course 60hI-60hNI1.173021

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)1.116120.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.274310.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.510680.083
Manapal/WT (break)1.592240.183
Manapal/WT (red)N/AN/A