Expression of 1-1-4.1.2.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19837 | 0.394 |
27DAP/17DAP | 0.88334 | 0.72 |
39DAP/27DAP | 0.95666 | 0.682 |
41DAP/39DAP | 1.31565 | 0.212 |
42DAP/41DAP | 1.36815 | 0.712 |
43DAP/42DAP | 0.77306 | 0.456 |
47DAP/43DAP | 0.64404 | 0.132 |
52DAP/47DAP | 1.01496 | 0.889 |
57DAP/52DAP | 0.93913 | 0.936 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1438 | 0.121 |
17DAP/reference | 1.05811 | 0.342 |
27DAP/reference | 1.0116 | 0.953 |
39DAP/reference | 1.00845 | 0.92 |
41DAP/reference | 0.99363 | 0.814 |
42DAP/reference | 1.00719 | 0.731 |
43DAP/reference | 0.94408 | 0.17 |
47DAP/reference | 0.96956 | 0.345 |
52DAP/reference | 0.98929 | 0.598 |
57DAP/reference | 0.98312 | 0.58 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.43871 | 0.062 |
27DAP/17DAP | 1.14261 | 0.636 |
39DAP/27DAP | 0.84168 | 0.437 |
41DAP/39DAP | 1.04257 | 0.861 |
42DAP/41DAP | 0.85334 | 0.197 |
43DAP/42DAP | 1.22543 | 0.134 |
47DAP/43DAP | 0.91298 | 0.734 |
52DAP/47DAP | 1.08647 | 0.856 |
57DAP/52DAP | 0.93008 | 0.617 |
57DAP/7DAP | 0.93387 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17789 | 1 |
17DAP/reference | 1.14254 | 0.574 |
27DAP/reference | 0.91611 | 0.264 |
39DAP/reference | 1.08036 | 0.351 |
41DAP/reference | 1.18204 | 0.199 |
42DAP/reference | 1.03662 | 1 |
43DAP/reference | 1.07508 | 0.746 |
47DAP/reference | 0.95551 | 0.383 |
52DAP/reference | 0.90254 | 0.332 |
57DAP/reference | 1.13711 | 0.804 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10195 | 0.424 |
17DAP/reference | 1.03644 | 1 |
27DAP/reference | 1.09989 | 0.427 |
39DAP/reference | 0.99062 | 0.586 |
41DAP/reference | 1.00896 | 0.615 |
42DAP/reference | 0.92703 | 0.189 |
43DAP/reference | 1.06374 | 0.719 |
47DAP/reference | 0.96362 | 0.41 |
52DAP/reference | 1.0561 | 0.789 |
57DAP/reference | 1.01843 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16779 | 0.631 |
17DAP/reference | 1.52652 | 0.037 |
27DAP/reference | 1.12302 | 0.575 |
39DAP/reference | 1.10158 | 0.496 |
41DAP/reference | 1.0274 | 0.984 |
42DAP/reference | 1.35832 | 0.189 |
43DAP/reference | 0.86415 | 0.294 |
47DAP/reference | 1.00829 | 1 |
52DAP/reference | 0.94003 | 0.505 |
57DAP/reference | 1.10634 | 0.135 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00795 | 1 |
26DAP/20DAP | 1.17273 | 0.334 |
34DAP/26DAP | 0.98747 | 0.961 |
51DAP/34DAP | 1.22317 | 0.105 |
52DAP/51DAP | 0.939 | 1 |
53DAP/52DAP | 1.05461 | 0.83 |
55DAP/53DAP | 0.77419 | 0.203 |
57DAP/55DAP | 1.17812 | 0.728 |
62DAP/57DAP | 1.76845 | 0.767 |
68DAP/62DAP | 0.75071 | 0.464 |
68DAP/14DAP | 1.04397 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.75693 | 0.097 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.81441 | 0.29 |
Mature Green Tomato/Ripe Tomato | 2.09253 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.87832 | 0.117 |
Ripe Pepper/Ripe Tomato | 4.13641 | 1 |
Mature Eggplant/Ripe Tomato | 3.59206 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.21446 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.92729 | 0.619 |
1-3/M82 | 0.82294 | 0.501 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.06922 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.942 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.96424 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.83248 | 0.796 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.78359 | 0.243 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.67347 | 1 |
IL7-3/WTpooled | 1.14041 | |
IL12-4/WTpooled | 0.73832 | 0.71 |
IL1-4/WTpooled | 0.96645 | 1 |
WT/WTpooled | 1.21881 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89152 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9768 | 1 |
DC3000/delta hrp 6h | 0.92654 | 0.95 |
DC3000/delta hrp 12h | 0.96788 | 1 |
DC3000/delta hrp 24h | 0.9407 | 0.618 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.42284 | |
DC3000 delta B/DC3000 delta AB | 0.84906 | 0.543 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96025 | 1 |
Exp 36h | 0.70049 | 0.41 |
Exp 60h | 0.77481 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97779 | 1 |
Var 0h | 1.09698 | 0.936 |
Var 12h I row2-row1 | 0.6757 | 0.514 |
Var 12h NI row2-row1 | 0.97785 | 1 |
Var 36h I row2-row1 | 0.85263 | 0.805 |
Var 36h NI row2-row1 | 1.45317 | 0.482 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.43047 | 0.793 |
Time course 0hI-0hNI | 0.91517 | 0.415 |
Time course 12hI-12hNI | 0.97874 | 0.893 |
Time course 36hI-36hNI | 0.87913 | 0.043 |
Time course 60hI-60hNI | 0.38396 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9008 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 0.98025 | 1 |
transgenic ySAMdc/azygous control (red) | 1.19635 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93688 | 0.14 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.5539 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.7411 | 0.083 |
Manapal/WT (break) | 1.86805 | 0.14 |
Manapal/WT (red) | 2.44139 | 0.133 |
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