Expression of 1-1-4.1.2.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.198370.394
27DAP/17DAP0.883340.72
39DAP/27DAP0.956660.682
41DAP/39DAP1.315650.212
42DAP/41DAP1.368150.712
43DAP/42DAP0.773060.456
47DAP/43DAP0.644040.132
52DAP/47DAP1.014960.889
57DAP/52DAP0.939130.936

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.14380.121
17DAP/reference1.058110.342
27DAP/reference1.01160.953
39DAP/reference1.008450.92
41DAP/reference0.993630.814
42DAP/reference1.007190.731
43DAP/reference0.944080.17
47DAP/reference0.969560.345
52DAP/reference0.989290.598
57DAP/reference0.983120.58

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.438710.062
27DAP/17DAP1.142610.636
39DAP/27DAP0.841680.437
41DAP/39DAP1.042570.861
42DAP/41DAP0.853340.197
43DAP/42DAP1.225430.134
47DAP/43DAP0.912980.734
52DAP/47DAP1.086470.856
57DAP/52DAP0.930080.617
57DAP/7DAP0.933871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.177891
17DAP/reference1.142540.574
27DAP/reference0.916110.264
39DAP/reference1.080360.351
41DAP/reference1.182040.199
42DAP/reference1.036621
43DAP/reference1.075080.746
47DAP/reference0.955510.383
52DAP/reference0.902540.332
57DAP/reference1.137110.804

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.101950.424
17DAP/reference1.036441
27DAP/reference1.099890.427
39DAP/reference0.990620.586
41DAP/reference1.008960.615
42DAP/reference0.927030.189
43DAP/reference1.063740.719
47DAP/reference0.963620.41
52DAP/reference1.05610.789
57DAP/reference1.018431

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.167790.631
17DAP/reference1.526520.037
27DAP/reference1.123020.575
39DAP/reference1.101580.496
41DAP/reference1.02740.984
42DAP/reference1.358320.189
43DAP/reference0.864150.294
47DAP/reference1.008291
52DAP/reference0.940030.505
57DAP/reference1.106340.135

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.007951
26DAP/20DAP1.172730.334
34DAP/26DAP0.987470.961
51DAP/34DAP1.223170.105
52DAP/51DAP0.9391
53DAP/52DAP1.054610.83
55DAP/53DAP0.774190.203
57DAP/55DAP1.178120.728
62DAP/57DAP1.768450.767
68DAP/62DAP0.750710.464
68DAP/14DAP1.043971

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.756930.097

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.814410.29
Mature Green Tomato/Ripe Tomato2.092530.017
Immature Eggplant/Mature Eggplant0.878320.117
Ripe Pepper/Ripe Tomato4.136411
Mature Eggplant/Ripe Tomato3.592060.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.21446
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.927290.619
1-3/M820.822940.501
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.06922
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.9420.642
6-2/M82N/AN/A
6-3/M820.96424
7-1/M82N/AN/A
7-2/M820.832480.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.783590.243
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.673471
IL7-3/WTpooled1.14041
IL12-4/WTpooled0.738320.71
IL1-4/WTpooled0.966451
WT/WTpooled1.218811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.891520.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.97681
DC3000/delta hrp 6h0.926540.95
DC3000/delta hrp 12h0.967881
DC3000/delta hrp 24h0.94070.618

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.42284
DC3000 delta B/DC3000 delta AB0.849060.543

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.960251
Exp 36h0.700490.41
Exp 60h0.774810.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977791
Var 0h1.096980.936
Var 12h I row2-row10.67570.514
Var 12h NI row2-row10.977851
Var 36h I row2-row10.852630.805
Var 36h NI row2-row11.453170.482
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.430470.793
Time course 0hI-0hNI0.915170.415
Time course 12hI-12hNI0.978740.893
Time course 36hI-36hNI0.879130.043
Time course 60hI-60hNI0.383960.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.90080.454
transgenic ySAMdc/azygous control (breaker)0.980251
transgenic ySAMdc/azygous control (red)1.196350.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.936880.14

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.55390.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.74110.083
Manapal/WT (break)1.868050.14
Manapal/WT (red)2.441390.133