Expression of 1-1-4.1.20.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10521 | 0.964 |
27DAP/17DAP | 1.5756 | 0.613 |
39DAP/27DAP | 0.89165 | 0.564 |
41DAP/39DAP | 1.45618 | 0.494 |
42DAP/41DAP | 1.18988 | 0.843 |
43DAP/42DAP | 0.89152 | 0.77 |
47DAP/43DAP | 0.98842 | 0.729 |
52DAP/47DAP | 1.25387 | 0.592 |
57DAP/52DAP | 0.73279 | 0.462 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7337 | |
17DAP/reference | 0.78473 | |
27DAP/reference | 1.07074 | |
39DAP/reference | 2.12614 | |
41DAP/reference | 0.39389 | |
42DAP/reference | 0.94184 | 0.295 |
43DAP/reference | 1.94802 | |
47DAP/reference | 0.97113 | 0.418 |
52DAP/reference | 0.59533 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06009 | 0.389 |
27DAP/17DAP | 0.955 | 0.854 |
39DAP/27DAP | 1.20733 | 0.068 |
41DAP/39DAP | 0.93928 | 0.781 |
42DAP/41DAP | 1.06801 | 0.872 |
43DAP/42DAP | 0.90768 | 0.216 |
47DAP/43DAP | 0.94476 | 0.743 |
52DAP/47DAP | 0.91842 | 0.686 |
57DAP/52DAP | 0.88189 | 0.264 |
57DAP/7DAP | 1.21573 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88606 | 0.146 |
17DAP/reference | 0.83814 | 0.011 |
27DAP/reference | 0.80614 | 0.01 |
39DAP/reference | 0.80763 | 0.011 |
41DAP/reference | 0.82848 | 0.022 |
42DAP/reference | 0.87938 | 0.028 |
43DAP/reference | 0.85661 | 0.017 |
47DAP/reference | 0.98818 | 0.671 |
52DAP/reference | 0.80073 | 0.018 |
57DAP/reference | 0.80598 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97528 | 0.669 |
17DAP/reference | 0.97009 | 0.447 |
27DAP/reference | 0.80853 | 0.139 |
39DAP/reference | 0.87566 | 0.067 |
41DAP/reference | 0.77247 | 0.01 |
42DAP/reference | 1.02943 | 0.649 |
43DAP/reference | 1.13061 | 0.429 |
47DAP/reference | 1.16302 | 0.018 |
52DAP/reference | 0.94601 | 0.111 |
57DAP/reference | 1.0829 | 0.208 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86106 | 0.05 |
17DAP/reference | 0.97021 | 0.601 |
27DAP/reference | 0.77805 | 0.026 |
39DAP/reference | 0.83569 | 0.019 |
41DAP/reference | 0.82856 | 0.02 |
42DAP/reference | 0.84498 | 0.015 |
43DAP/reference | 0.85618 | 0.042 |
47DAP/reference | 1.00863 | 1 |
52DAP/reference | 0.87344 | 0.223 |
57DAP/reference | 0.73584 | 0.053 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04481 | 0.966 |
26DAP/20DAP | 0.93843 | 0.512 |
34DAP/26DAP | 1.04694 | 1 |
51DAP/34DAP | 1.0037 | 0.957 |
52DAP/51DAP | 0.92343 | 1 |
53DAP/52DAP | 1.34387 | 0.063 |
55DAP/53DAP | 0.95385 | 0.725 |
57DAP/55DAP | 1.54354 | 0.626 |
62DAP/57DAP | 1.00771 | 0.994 |
68DAP/62DAP | 1.04238 | 0.858 |
68DAP/14DAP | 1.01974 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.88927 | 0.072 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.92105 | 0.551 |
Mature Green Tomato/Ripe Tomato | 1.38668 | 0.437 |
Immature Eggplant/Mature Eggplant | 0.89103 | 0.254 |
Ripe Pepper/Ripe Tomato | 2.76453 | 0.244 |
Mature Eggplant/Ripe Tomato | 2.61768 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93972 | 0.907 |
1-1-2/M82 | 0.95979 | 1 |
12-2/M82 | 1.07868 | 1 |
12-4/M82 | 0.92431 | 1 |
1-3/M82 | 1.00277 | 1 |
2-1-1/M82 | 0.93692 | |
2-1/M82 | 1.29666 | 1 |
2-6/M82 | 1.00113 | 1 |
3-2/M82 | 0.65469 | |
4-1-1/M82 | 1.21316 | 0.677 |
4-1/M82 | 0.87448 | 1 |
4-3-2/M82 | 0.93304 | 1 |
4-3/M82 | 1.13774 | 1 |
5-3/M82 | 1.01666 | 1 |
6-2/M82 | 1.06567 | 1 |
6-3/M82 | 1.05031 | 1 |
7-1/M82 | 0.77054 | 0.452 |
7-2/M82 | 0.97633 | 1 |
9-3-2/M82 | 0.83235 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.32271 | 0.277 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.94117 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.92305 | 0.415 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03608 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0193 | 1 |
DC3000/delta hrp 6h | 0.87726 | 0.95 |
DC3000/delta hrp 12h | 1.40149 | 1 |
DC3000/delta hrp 24h | 1.63566 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.71144 | 0.057 |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.94062 | 1 |
Exp 36h | 1.33695 | 0.693 |
Exp 60h | 1.17828 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97254 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.0693 | 0.473 |
Var 12h NI row2-row1 | 0.98898 | 0.906 |
Var 36h I row2-row1 | 0.90975 | 0.805 |
Var 36h NI row2-row1 | 1.37205 | 1 |
Var 60h I row2-row1 | 0.99879 | 1 |
Var 60h NI row2-row1 | 1.15687 | 1 |
Time course 0hI-0hNI | 1.18015 | 0.719 |
Time course 12hI-12hNI | 0.91333 | 0.287 |
Time course 36hI-36hNI | 0.86616 | 0.159 |
Time course 60hI-60hNI | 1.24345 | 0.013 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98558 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.57902 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.88434 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04858 | 0.071 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07679 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.71896 | 0.172 |
Manapal/WT (break) | 0.78412 | 1 |
Manapal/WT (red) | 1.09549 | 1 |
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