Expression of 1-1-4.1.20.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.105210.964
27DAP/17DAP1.57560.613
39DAP/27DAP0.891650.564
41DAP/39DAP1.456180.494
42DAP/41DAP1.189880.843
43DAP/42DAP0.891520.77
47DAP/43DAP0.988420.729
52DAP/47DAP1.253870.592
57DAP/52DAP0.732790.462

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.7337
17DAP/reference0.78473
27DAP/reference1.07074
39DAP/reference2.12614
41DAP/reference0.39389
42DAP/reference0.941840.295
43DAP/reference1.94802
47DAP/reference0.971130.418
52DAP/reference0.59533
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.060090.389
27DAP/17DAP0.9550.854
39DAP/27DAP1.207330.068
41DAP/39DAP0.939280.781
42DAP/41DAP1.068010.872
43DAP/42DAP0.907680.216
47DAP/43DAP0.944760.743
52DAP/47DAP0.918420.686
57DAP/52DAP0.881890.264
57DAP/7DAP1.215731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.886060.146
17DAP/reference0.838140.011
27DAP/reference0.806140.01
39DAP/reference0.807630.011
41DAP/reference0.828480.022
42DAP/reference0.879380.028
43DAP/reference0.856610.017
47DAP/reference0.988180.671
52DAP/reference0.800730.018
57DAP/reference0.805980.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.975280.669
17DAP/reference0.970090.447
27DAP/reference0.808530.139
39DAP/reference0.875660.067
41DAP/reference0.772470.01
42DAP/reference1.029430.649
43DAP/reference1.130610.429
47DAP/reference1.163020.018
52DAP/reference0.946010.111
57DAP/reference1.08290.208

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.861060.05
17DAP/reference0.970210.601
27DAP/reference0.778050.026
39DAP/reference0.835690.019
41DAP/reference0.828560.02
42DAP/reference0.844980.015
43DAP/reference0.856180.042
47DAP/reference1.008631
52DAP/reference0.873440.223
57DAP/reference0.735840.053

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.044810.966
26DAP/20DAP0.938430.512
34DAP/26DAP1.046941
51DAP/34DAP1.00370.957
52DAP/51DAP0.923431
53DAP/52DAP1.343870.063
55DAP/53DAP0.953850.725
57DAP/55DAP1.543540.626
62DAP/57DAP1.007710.994
68DAP/62DAP1.042380.858
68DAP/14DAP1.019741

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.889270.072

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.921050.551
Mature Green Tomato/Ripe Tomato1.386680.437
Immature Eggplant/Mature Eggplant0.891030.254
Ripe Pepper/Ripe Tomato2.764530.244
Mature Eggplant/Ripe Tomato2.617680.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.939720.907
1-1-2/M820.959791
12-2/M821.078681
12-4/M820.924311
1-3/M821.002771
2-1-1/M820.93692
2-1/M821.296661
2-6/M821.001131
3-2/M820.65469
4-1-1/M821.213160.677
4-1/M820.874481
4-3-2/M820.933041
4-3/M821.137741
5-3/M821.016661
6-2/M821.065671
6-3/M821.050311
7-1/M820.770540.452
7-2/M820.976331
9-3-2/M820.832351

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.322710.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.941171
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.923050.415
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.036081

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.01931
DC3000/delta hrp 6h0.877260.95
DC3000/delta hrp 12h1.401491
DC3000/delta hrp 24h1.635660.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.711440.057
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.940621
Exp 36h1.336950.693
Exp 60h1.178280.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.972541
Var 0hN/AN/A
Var 12h I row2-row11.06930.473
Var 12h NI row2-row10.988980.906
Var 36h I row2-row10.909750.805
Var 36h NI row2-row11.372051
Var 60h I row2-row10.998791
Var 60h NI row2-row11.156871
Time course 0hI-0hNI1.180150.719
Time course 12hI-12hNI0.913330.287
Time course 36hI-36hNI0.866160.159
Time course 60hI-60hNI1.243450.013

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.985580.862
transgenic ySAMdc/azygous control (breaker)0.579020.131
transgenic ySAMdc/azygous control (red)0.884341

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.048580.071

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.076790.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.718960.172
Manapal/WT (break)0.784121
Manapal/WT (red)1.095491