Expression of 1-1-4.1.20.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05743 | 0.977 |
27DAP/17DAP | 1.24618 | 0.833 |
39DAP/27DAP | 0.76805 | 0.507 |
41DAP/39DAP | 1.04464 | 0.929 |
42DAP/41DAP | 0.88265 | 1 |
43DAP/42DAP | 0.97571 | 0.914 |
47DAP/43DAP | 0.99312 | 0.89 |
52DAP/47DAP | 1.67227 | 0.307 |
57DAP/52DAP | 1.28487 | 0.784 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87598 | 0.094 |
17DAP/reference | 0.88035 | 0.074 |
27DAP/reference | 0.92365 | 0.098 |
39DAP/reference | 0.95519 | 0.565 |
41DAP/reference | 0.87604 | 0.039 |
42DAP/reference | 0.9006 | 0.004 |
43DAP/reference | 0.83802 | 0.043 |
47DAP/reference | 0.94569 | 0.083 |
52DAP/reference | 1.02148 | 0.991 |
57DAP/reference | 0.93737 | 0.294 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8586 | 0.415 |
27DAP/17DAP | 1.08808 | 0.881 |
39DAP/27DAP | 1.30647 | 0.471 |
41DAP/39DAP | 1.09641 | 0.773 |
42DAP/41DAP | 1.08364 | 1 |
43DAP/42DAP | 0.9843 | 0.709 |
47DAP/43DAP | 1.09479 | 0.93 |
52DAP/47DAP | 0.92872 | 0.763 |
57DAP/52DAP | 1.4396 | 0.405 |
57DAP/7DAP | 1.06986 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76504 | 0.058 |
17DAP/reference | 0.85239 | 0.082 |
27DAP/reference | 0.86826 | 0.017 |
39DAP/reference | 0.83721 | 0.109 |
41DAP/reference | 0.83328 | 0.034 |
42DAP/reference | 0.79984 | 0.035 |
43DAP/reference | 0.92841 | 0.192 |
47DAP/reference | 0.85351 | 0.168 |
52DAP/reference | 0.93163 | 0.232 |
57DAP/reference | 1.01215 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05194 | 0.907 |
17DAP/reference | 0.87163 | 0.106 |
27DAP/reference | 0.9769 | 0.438 |
39DAP/reference | 1.00703 | 0.661 |
41DAP/reference | 0.87124 | 0.112 |
42DAP/reference | 1.07287 | 0.863 |
43DAP/reference | 1.21728 | 0.173 |
47DAP/reference | 0.99118 | 0.609 |
52DAP/reference | 0.91263 | 0.156 |
57DAP/reference | 0.80706 | 0.079 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93415 | 0.335 |
17DAP/reference | 0.96011 | 0.374 |
27DAP/reference | 0.99366 | 0.727 |
39DAP/reference | 0.90553 | 0.037 |
41DAP/reference | 1.0397 | 0.605 |
42DAP/reference | 0.95143 | 0.445 |
43DAP/reference | 0.90278 | 0.179 |
47DAP/reference | 0.96426 | 0.409 |
52DAP/reference | 0.73294 | 0.081 |
57DAP/reference | 1.00702 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10272 | 0.966 |
26DAP/20DAP | 0.85166 | 1 |
34DAP/26DAP | 1.1919 | 1 |
51DAP/34DAP | 1.05735 | 1 |
52DAP/51DAP | 1.38483 | 0.377 |
53DAP/52DAP | 1.18961 | 0.697 |
55DAP/53DAP | 1.20744 | 0.719 |
57DAP/55DAP | 0.98554 | 0.902 |
62DAP/57DAP | 0.94907 | 0.994 |
68DAP/62DAP | 1.45981 | 0.076 |
68DAP/14DAP | 1.09026 | 0.328 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.16062 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.54577 | 0.109 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.38682 | 0.065 |
Ripe Pepper/Ripe Tomato | 0.95434 | 1 |
Mature Eggplant/Ripe Tomato | 0.97149 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11205 | 1 |
1-1-2/M82 | 1.02643 | 1 |
12-2/M82 | 1.29927 | |
12-4/M82 | 1.23909 | 0.655 |
1-3/M82 | 0.6338 | 0.339 |
2-1-1/M82 | 0.99549 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96381 | 1 |
3-2/M82 | 0.87051 | |
4-1-1/M82 | 0.89612 | 0.962 |
4-1/M82 | 2.48973 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.88823 | 1 |
5-3/M82 | 0.96003 | 1 |
6-2/M82 | 0.80976 | 0.481 |
6-3/M82 | 0.88974 | |
7-1/M82 | 0.97314 | |
7-2/M82 | 0.69306 | 0.796 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1073 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01435 | 0.921 |
DC3000/delta hrp 6h | 0.82392 | 0.95 |
DC3000/delta hrp 12h | 1.01 | 1 |
DC3000/delta hrp 24h | 0.98561 | 0.966 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.6402 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.94238 | 1 |
Exp 36h | 1.09917 | 1 |
Exp 60h | 1.39249 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0399 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.06825 | 0.544 |
Var 12h NI row2-row1 | 1.0662 | 1 |
Var 36h I row2-row1 | 0.92237 | 1 |
Var 36h NI row2-row1 | 0.88337 | 0.743 |
Var 60h I row2-row1 | 1.46691 | 1 |
Var 60h NI row2-row1 | 1.08542 | 1 |
Time course 0hI-0hNI | 1.05266 | 0.764 |
Time course 12hI-12hNI | 1.02329 | 0.827 |
Time course 36hI-36hNI | 1.27459 | 0.248 |
Time course 60hI-60hNI | 1.46846 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0882 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 1.04071 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.02827 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99808 | 0.911 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.90661 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.1205 | 0.14 |
Manapal/WT (break) | 0.91638 | 1 |
Manapal/WT (red) | 1.01279 | 1 |
|
|