Expression of 1-1-4.1.20.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.057430.977
27DAP/17DAP1.246180.833
39DAP/27DAP0.768050.507
41DAP/39DAP1.044640.929
42DAP/41DAP0.882651
43DAP/42DAP0.975710.914
47DAP/43DAP0.993120.89
52DAP/47DAP1.672270.307
57DAP/52DAP1.284870.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.875980.094
17DAP/reference0.880350.074
27DAP/reference0.923650.098
39DAP/reference0.955190.565
41DAP/reference0.876040.039
42DAP/reference0.90060.004
43DAP/reference0.838020.043
47DAP/reference0.945690.083
52DAP/reference1.021480.991
57DAP/reference0.937370.294

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.85860.415
27DAP/17DAP1.088080.881
39DAP/27DAP1.306470.471
41DAP/39DAP1.096410.773
42DAP/41DAP1.083641
43DAP/42DAP0.98430.709
47DAP/43DAP1.094790.93
52DAP/47DAP0.928720.763
57DAP/52DAP1.43960.405
57DAP/7DAP1.069861

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.765040.058
17DAP/reference0.852390.082
27DAP/reference0.868260.017
39DAP/reference0.837210.109
41DAP/reference0.833280.034
42DAP/reference0.799840.035
43DAP/reference0.928410.192
47DAP/reference0.853510.168
52DAP/reference0.931630.232
57DAP/reference1.012151

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.051940.907
17DAP/reference0.871630.106
27DAP/reference0.97690.438
39DAP/reference1.007030.661
41DAP/reference0.871240.112
42DAP/reference1.072870.863
43DAP/reference1.217280.173
47DAP/reference0.991180.609
52DAP/reference0.912630.156
57DAP/reference0.807060.079

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934150.335
17DAP/reference0.960110.374
27DAP/reference0.993660.727
39DAP/reference0.905530.037
41DAP/reference1.03970.605
42DAP/reference0.951430.445
43DAP/reference0.902780.179
47DAP/reference0.964260.409
52DAP/reference0.732940.081
57DAP/reference1.007021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.102720.966
26DAP/20DAP0.851661
34DAP/26DAP1.19191
51DAP/34DAP1.057351
52DAP/51DAP1.384830.377
53DAP/52DAP1.189610.697
55DAP/53DAP1.207440.719
57DAP/55DAP0.985540.902
62DAP/57DAP0.949070.994
68DAP/62DAP1.459810.076
68DAP/14DAP1.090260.328

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.160620.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.545770.109
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.386820.065
Ripe Pepper/Ripe Tomato0.954341
Mature Eggplant/Ripe Tomato0.971491

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.112051
1-1-2/M821.026431
12-2/M821.29927
12-4/M821.239090.655
1-3/M820.63380.339
2-1-1/M820.995491
2-1/M82N/AN/A
2-6/M820.963811
3-2/M820.87051
4-1-1/M820.896120.962
4-1/M822.48973
4-3-2/M82N/AN/A
4-3/M820.888231
5-3/M820.960031
6-2/M820.809760.481
6-3/M820.88974
7-1/M820.97314
7-2/M820.693060.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.10731

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.014350.921
DC3000/delta hrp 6h0.823920.95
DC3000/delta hrp 12h1.011
DC3000/delta hrp 24h0.985610.966

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.6402

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.942381
Exp 36h1.099171
Exp 60h1.392490.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.03991
Var 0hN/AN/A
Var 12h I row2-row11.068250.544
Var 12h NI row2-row11.06621
Var 36h I row2-row10.922371
Var 36h NI row2-row10.883370.743
Var 60h I row2-row11.466911
Var 60h NI row2-row11.085421
Time course 0hI-0hNI1.052660.764
Time course 12hI-12hNI1.023290.827
Time course 36hI-36hNI1.274590.248
Time course 60hI-60hNI1.468460.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.08820.511
transgenic ySAMdc/azygous control (breaker)1.040710.248
transgenic ySAMdc/azygous control (red)1.028270.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.998080.911

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.906610.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.12050.14
Manapal/WT (break)0.916381
Manapal/WT (red)1.012791