Expression of 1-1-4.1.20.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.94920.689
27DAP/17DAP1.398250.8
39DAP/27DAP0.894270.608
41DAP/39DAP1.825090.372
42DAP/41DAP0.818080.774
43DAP/42DAP1.040081
47DAP/43DAP0.973310.779
52DAP/47DAP0.95960.779
57DAP/52DAP1.012670.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.814950.032
17DAP/reference0.935290.298
27DAP/reference0.951230.369
39DAP/reference1.040230.603
41DAP/reference0.995191
42DAP/reference0.852760.001
43DAP/reference1.016560.982
47DAP/reference1.039390.433
52DAP/reference1.019530.951
57DAP/reference1.008691

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.787330.08
27DAP/17DAP0.841780.724
39DAP/27DAP1.185840.41
41DAP/39DAP0.854030.077
42DAP/41DAP1.050870.869
43DAP/42DAP1.002851
47DAP/43DAP1.054370.853
52DAP/47DAP1.009130.982
57DAP/52DAP0.818570.247
57DAP/7DAP1.632541

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.845120.063
17DAP/reference0.768750.012
27DAP/reference0.759710.01
39DAP/reference0.87170.064
41DAP/reference0.842860.033
42DAP/reference0.72750.01
43DAP/reference0.758350.012
47DAP/reference0.868940.168
52DAP/reference0.791020.019
57DAP/reference0.792890.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.81290.02
17DAP/reference0.69530.004
27DAP/reference0.782970.048
39DAP/reference0.856520.093
41DAP/reference0.852360.105
42DAP/reference0.785180.015
43DAP/reference0.826480.082
47DAP/reference0.92490.141
52DAP/reference0.821930.006
57DAP/reference0.810060.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.81430.028
17DAP/reference0.840010.064
27DAP/reference0.885030.113
39DAP/reference0.819850.017
41DAP/reference0.83270.025
42DAP/reference0.839450.071
43DAP/reference0.799050.043
47DAP/reference0.927540.24
52DAP/reference0.690270.086
57DAP/reference0.793770.06

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.264880.56
26DAP/20DAP1.476120.357
34DAP/26DAP1.177570.819
51DAP/34DAP1.170420.925
52DAP/51DAP0.96071
53DAP/52DAP0.868310.342
55DAP/53DAP1.091850.842
57DAP/55DAP0.9360.765
62DAP/57DAP1.232630.35
68DAP/62DAP1.176950.507
68DAP/14DAP1.038911

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.354240.087

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.87975
Mature Green Tomato/Ripe Tomato0.937350.611
Immature Eggplant/Mature Eggplant2.378250.051
Ripe Pepper/Ripe Tomato0.265520.224
Mature Eggplant/Ripe Tomato0.261610.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.991451
1-1-2/M820.95345
12-2/M820.86139
12-4/M820.974271
1-3/M820.646080.378
2-1-1/M821.0473
2-1/M821.34390.345
2-6/M820.825321
3-2/M821.10042
4-1-1/M821.107591
4-1/M821.05703
4-3-2/M821.03645
4-3/M820.768550.611
5-3/M821.039851
6-2/M820.88696
6-3/M82N/AN/A
7-1/M821.12766
7-2/M820.80230.578
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.946321

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.965131
DC3000/delta hrp 6h1.075570.95
DC3000/delta hrp 12h0.879571
DC3000/delta hrp 24h1.855330.065

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.060710.598
DC3000 delta B/DC3000 delta AB1.359330.09

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.012841
Exp 36h0.853860.661
Exp 60h1.017161

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.960641
Var 0hN/AN/A
Var 12h I row2-row11.16910.406
Var 12h NI row2-row10.979410.906
Var 36h I row2-row10.91671
Var 36h NI row2-row10.809560.61
Var 60h I row2-row10.882370.292
Var 60h NI row2-row11.174270.904
Time course 0hI-0hNI0.996541
Time course 12hI-12hNI0.98240.87
Time course 36hI-36hNI0.969410.45
Time course 60hI-60hNI2.166950.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.063050.654
transgenic ySAMdc/azygous control (breaker)1.294350.178
transgenic ySAMdc/azygous control (red)0.964781

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.206780.045

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.855030.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.850930.172
Manapal/WT (break)0.717310.299
Manapal/WT (red)0.636560.181