Expression of 1-1-4.1.20.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9492 | 0.689 |
27DAP/17DAP | 1.39825 | 0.8 |
39DAP/27DAP | 0.89427 | 0.608 |
41DAP/39DAP | 1.82509 | 0.372 |
42DAP/41DAP | 0.81808 | 0.774 |
43DAP/42DAP | 1.04008 | 1 |
47DAP/43DAP | 0.97331 | 0.779 |
52DAP/47DAP | 0.9596 | 0.779 |
57DAP/52DAP | 1.01267 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81495 | 0.032 |
17DAP/reference | 0.93529 | 0.298 |
27DAP/reference | 0.95123 | 0.369 |
39DAP/reference | 1.04023 | 0.603 |
41DAP/reference | 0.99519 | 1 |
42DAP/reference | 0.85276 | 0.001 |
43DAP/reference | 1.01656 | 0.982 |
47DAP/reference | 1.03939 | 0.433 |
52DAP/reference | 1.01953 | 0.951 |
57DAP/reference | 1.00869 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78733 | 0.08 |
27DAP/17DAP | 0.84178 | 0.724 |
39DAP/27DAP | 1.18584 | 0.41 |
41DAP/39DAP | 0.85403 | 0.077 |
42DAP/41DAP | 1.05087 | 0.869 |
43DAP/42DAP | 1.00285 | 1 |
47DAP/43DAP | 1.05437 | 0.853 |
52DAP/47DAP | 1.00913 | 0.982 |
57DAP/52DAP | 0.81857 | 0.247 |
57DAP/7DAP | 1.63254 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84512 | 0.063 |
17DAP/reference | 0.76875 | 0.012 |
27DAP/reference | 0.75971 | 0.01 |
39DAP/reference | 0.8717 | 0.064 |
41DAP/reference | 0.84286 | 0.033 |
42DAP/reference | 0.7275 | 0.01 |
43DAP/reference | 0.75835 | 0.012 |
47DAP/reference | 0.86894 | 0.168 |
52DAP/reference | 0.79102 | 0.019 |
57DAP/reference | 0.79289 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8129 | 0.02 |
17DAP/reference | 0.6953 | 0.004 |
27DAP/reference | 0.78297 | 0.048 |
39DAP/reference | 0.85652 | 0.093 |
41DAP/reference | 0.85236 | 0.105 |
42DAP/reference | 0.78518 | 0.015 |
43DAP/reference | 0.82648 | 0.082 |
47DAP/reference | 0.9249 | 0.141 |
52DAP/reference | 0.82193 | 0.006 |
57DAP/reference | 0.81006 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8143 | 0.028 |
17DAP/reference | 0.84001 | 0.064 |
27DAP/reference | 0.88503 | 0.113 |
39DAP/reference | 0.81985 | 0.017 |
41DAP/reference | 0.8327 | 0.025 |
42DAP/reference | 0.83945 | 0.071 |
43DAP/reference | 0.79905 | 0.043 |
47DAP/reference | 0.92754 | 0.24 |
52DAP/reference | 0.69027 | 0.086 |
57DAP/reference | 0.79377 | 0.06 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.26488 | 0.56 |
26DAP/20DAP | 1.47612 | 0.357 |
34DAP/26DAP | 1.17757 | 0.819 |
51DAP/34DAP | 1.17042 | 0.925 |
52DAP/51DAP | 0.9607 | 1 |
53DAP/52DAP | 0.86831 | 0.342 |
55DAP/53DAP | 1.09185 | 0.842 |
57DAP/55DAP | 0.936 | 0.765 |
62DAP/57DAP | 1.23263 | 0.35 |
68DAP/62DAP | 1.17695 | 0.507 |
68DAP/14DAP | 1.03891 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.35424 | 0.087 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.87975 | |
Mature Green Tomato/Ripe Tomato | 0.93735 | 0.611 |
Immature Eggplant/Mature Eggplant | 2.37825 | 0.051 |
Ripe Pepper/Ripe Tomato | 0.26552 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.26161 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99145 | 1 |
1-1-2/M82 | 0.95345 | |
12-2/M82 | 0.86139 | |
12-4/M82 | 0.97427 | 1 |
1-3/M82 | 0.64608 | 0.378 |
2-1-1/M82 | 1.0473 | |
2-1/M82 | 1.3439 | 0.345 |
2-6/M82 | 0.82532 | 1 |
3-2/M82 | 1.10042 | |
4-1-1/M82 | 1.10759 | 1 |
4-1/M82 | 1.05703 | |
4-3-2/M82 | 1.03645 | |
4-3/M82 | 0.76855 | 0.611 |
5-3/M82 | 1.03985 | 1 |
6-2/M82 | 0.88696 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.12766 | |
7-2/M82 | 0.8023 | 0.578 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94632 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96513 | 1 |
DC3000/delta hrp 6h | 1.07557 | 0.95 |
DC3000/delta hrp 12h | 0.87957 | 1 |
DC3000/delta hrp 24h | 1.85533 | 0.065 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06071 | 0.598 |
DC3000 delta B/DC3000 delta AB | 1.35933 | 0.09 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.01284 | 1 |
Exp 36h | 0.85386 | 0.661 |
Exp 60h | 1.01716 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96064 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.1691 | 0.406 |
Var 12h NI row2-row1 | 0.97941 | 0.906 |
Var 36h I row2-row1 | 0.9167 | 1 |
Var 36h NI row2-row1 | 0.80956 | 0.61 |
Var 60h I row2-row1 | 0.88237 | 0.292 |
Var 60h NI row2-row1 | 1.17427 | 0.904 |
Time course 0hI-0hNI | 0.99654 | 1 |
Time course 12hI-12hNI | 0.9824 | 0.87 |
Time course 36hI-36hNI | 0.96941 | 0.45 |
Time course 60hI-60hNI | 2.16695 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06305 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 1.29435 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.96478 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.20678 | 0.045 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.85503 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.85093 | 0.172 |
Manapal/WT (break) | 0.71731 | 0.299 |
Manapal/WT (red) | 0.63656 | 0.181 |
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