Expression of 1-1-4.1.20.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14663 | 0.838 |
27DAP/17DAP | 1.43525 | 0.632 |
39DAP/27DAP | 0.83648 | 0.522 |
41DAP/39DAP | 1.60512 | 0.232 |
42DAP/41DAP | 0.97971 | 1 |
43DAP/42DAP | 1.0887 | 1 |
47DAP/43DAP | 1.15763 | 0.873 |
52DAP/47DAP | 1.15125 | 0.804 |
57DAP/52DAP | 0.93575 | 0.89 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73056 | |
17DAP/reference | 0.78173 | 0.567 |
27DAP/reference | 0.41865 | |
39DAP/reference | 1.67905 | 0.903 |
41DAP/reference | N/A | N/A |
42DAP/reference | N/A | N/A |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.45762 | 0.191 |
52DAP/reference | 0.57604 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.47741 | 0.179 |
27DAP/17DAP | 0.90098 | 0.821 |
39DAP/27DAP | 0.89073 | 0.488 |
41DAP/39DAP | 1.20649 | 0.565 |
42DAP/41DAP | 0.87257 | 0.412 |
43DAP/42DAP | 0.91202 | 0.538 |
47DAP/43DAP | 1.04354 | 0.973 |
52DAP/47DAP | 1.12394 | 0.779 |
57DAP/52DAP | 1.2973 | 0.232 |
57DAP/7DAP | 1.36708 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1086 | 0.511 |
17DAP/reference | 1.03013 | 1 |
27DAP/reference | 1.02572 | 1 |
39DAP/reference | 0.8488 | 0.049 |
41DAP/reference | 0.81654 | 0.024 |
42DAP/reference | 0.82685 | 0.027 |
43DAP/reference | 0.99715 | 0.637 |
47DAP/reference | 1.06855 | 0.571 |
52DAP/reference | 0.97611 | 0.477 |
57DAP/reference | 1.14626 | 0.288 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76655 | 0.032 |
17DAP/reference | 0.7224 | 0.012 |
27DAP/reference | 0.7382 | 0.173 |
39DAP/reference | 0.79469 | 0.079 |
41DAP/reference | 0.80285 | 0.231 |
42DAP/reference | 2.65005 | |
43DAP/reference | 0.83542 | 0.212 |
47DAP/reference | 0.77576 | |
52DAP/reference | 0.84085 | 0.131 |
57DAP/reference | 0.74141 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03217 | 0.882 |
17DAP/reference | 0.914 | 0.381 |
27DAP/reference | 1.04947 | 0.749 |
39DAP/reference | 1.08057 | 0.733 |
41DAP/reference | 1.07508 | 0.174 |
42DAP/reference | 0.93979 | 0.445 |
43DAP/reference | 1.03339 | 0.639 |
47DAP/reference | 0.84914 | 0.03 |
52DAP/reference | 3.66003 | 0.176 |
57DAP/reference | 1.26715 | 0.66 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10571 | 0.966 |
26DAP/20DAP | 1.21751 | 0.524 |
34DAP/26DAP | 1.21771 | 1 |
51DAP/34DAP | 1.05799 | 0.856 |
52DAP/51DAP | 0.70736 | 1 |
53DAP/52DAP | 0.92052 | 0.684 |
55DAP/53DAP | 0.74852 | 0.233 |
57DAP/55DAP | 1.26961 | |
62DAP/57DAP | 1.00495 | 1 |
68DAP/62DAP | 1.90349 | 0.032 |
68DAP/14DAP | 2.07626 | 0.08 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.12187 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.82063 | 0.329 |
Mature Green Tomato/Ripe Tomato | 0.82784 | 0.165 |
Immature Eggplant/Mature Eggplant | 1.02692 | 1 |
Ripe Pepper/Ripe Tomato | 1.94219 | |
Mature Eggplant/Ripe Tomato | 0.95514 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.82536 | 0.944 |
1-1-2/M82 | 0.84121 | 1 |
12-2/M82 | 0.91354 | |
12-4/M82 | 1.04846 | 1 |
1-3/M82 | 0.57736 | 0.501 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 1.26055 | 0.345 |
2-6/M82 | 0.80654 | |
3-2/M82 | 0.94301 | 1 |
4-1-1/M82 | 1.20491 | |
4-1/M82 | 1.13921 | 1 |
4-3-2/M82 | 0.72196 | 0.487 |
4-3/M82 | 0.70437 | 0.292 |
5-3/M82 | 1.10743 | 1 |
6-2/M82 | 0.99443 | 1 |
6-3/M82 | 1.40926 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.90441 | 0.434 |
9-3-2/M82 | 0.88139 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83146 | 0.321 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.37092 | 0.792 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.2921 | |
IL1-4/WTpooled | 0.87399 | 0.699 |
WT/WTpooled | 0.52616 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 4.52738 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00063 | 1 |
DC3000/delta hrp 6h | 0.69612 | |
DC3000/delta hrp 12h | 0.81121 | 1 |
DC3000/delta hrp 24h | 1.44723 | 0.356 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95548 | 1 |
Exp 36h | 1.51347 | 0.489 |
Exp 60h | 1.34117 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0556 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.43316 | 0.506 |
Var 12h NI row2-row1 | 0.72118 | 1 |
Var 36h I row2-row1 | 0.49938 | 1 |
Var 36h NI row2-row1 | 1.98719 | 0.253 |
Var 60h I row2-row1 | 0.98919 | 1 |
Var 60h NI row2-row1 | 1.44435 | 0.904 |
Time course 0hI-0hNI | 0.96639 | 0.845 |
Time course 12hI-12hNI | 0.87475 | 0.592 |
Time course 36hI-36hNI | 1.477 | 0.355 |
Time course 60hI-60hNI | 2.8308 | 0.029 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92382 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.07558 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03679 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.97044 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.74026 | 1 |
Manapal/WT (break) | 0.93818 | 1 |
Manapal/WT (red) | 0.71524 | 0.188 |
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