Expression of 1-1-4.1.20.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.278350.255
27DAP/17DAP1.310910.801
39DAP/27DAP1.556580.363
41DAP/39DAP0.897770.552
42DAP/41DAP0.861171
43DAP/42DAP1.045760.937
47DAP/43DAP0.925520.625
52DAP/47DAP1.717440.443
57DAP/52DAP1.060271

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.884640.075
17DAP/reference0.969520.474
27DAP/reference0.923460.24
39DAP/reference1.030620.486
41DAP/reference1.005740.963
42DAP/reference0.947260.088
43DAP/reference1.010870.866
47DAP/reference0.921380.025
52DAP/reference0.938250.292
57DAP/reference0.922560.078

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.910010.219
27DAP/17DAP0.992220.943
39DAP/27DAP1.157120.314
41DAP/39DAP0.989370.997
42DAP/41DAP1.015440.929
43DAP/42DAP1.040160.664
47DAP/43DAP1.081980.827
52DAP/47DAP1.007040.962
57DAP/52DAP1.012820.978
57DAP/7DAP1.137991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.049760.676
17DAP/reference1.152690.092
27DAP/reference1.02570.804
39DAP/reference1.237270.007
41DAP/reference1.285540.034
42DAP/reference1.343470.007
43DAP/reference1.505170.007
47DAP/reference1.084020.885
52DAP/reference1.204520.011
57DAP/reference1.241170.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.978860.706
17DAP/reference0.951140.317
27DAP/reference0.880720.155
39DAP/reference0.836940.074
41DAP/reference0.883270.188
42DAP/reference0.878930.081
43DAP/reference1.072290.809
47DAP/reference1.013360.994
52DAP/reference1.027380.667
57DAP/reference1.124620.334

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.102280.356
17DAP/reference1.082510.42
27DAP/reference1.269530.023
39DAP/reference1.25260.015
41DAP/reference1.182720.026
42DAP/reference1.049390.759
43DAP/reference1.097570.828
47DAP/reference0.920680.296
52DAP/reference1.085120.463
57DAP/reference0.780460.12

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.917860.89
26DAP/20DAP0.946671
34DAP/26DAP1.008491
51DAP/34DAP1.172390.251
52DAP/51DAP1.166270.281
53DAP/52DAP1.120970.594
55DAP/53DAP1.057450.653
57DAP/55DAP1.105660.818
62DAP/57DAP1.41270.133
68DAP/62DAP0.915240.609
68DAP/14DAP0.672410.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.205850.347

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.761160.223
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.327450.081
Ripe Pepper/Ripe Tomato0.929840.293
Mature Eggplant/Ripe Tomato0.829581

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.186940.551
1-1-2/M820.97782
12-2/M82N/AN/A
12-4/M821.16930.611
1-3/M820.89394
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.960531
3-2/M82N/AN/A
4-1-1/M820.74925
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.18462
5-3/M820.988521
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.88884
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.82477
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.964781

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.018530.921
DC3000/delta hrp 6h0.787280.95
DC3000/delta hrp 12h1.057681
DC3000/delta hrp 24h0.935390.629

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.577730.11
DC3000 delta B/DC3000 delta AB1.091350.386

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.891351
Exp 36h1.313050.489
Exp 60h1.213740.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999021
Var 0hN/AN/A
Var 12h I row2-row11.158740.22
Var 12h NI row2-row10.998691
Var 36h I row2-row10.874450.805
Var 36h NI row2-row11.247071
Var 60h I row2-row11.182740.562
Var 60h NI row2-row11.152110.904
Time course 0hI-0hNI1.091890.662
Time course 12hI-12hNI1.013180.892
Time course 36hI-36hNI0.983020.589
Time course 60hI-60hNI1.160660.137

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.024870.654
transgenic ySAMdc/azygous control (breaker)1.024660.248
transgenic ySAMdc/azygous control (red)0.959381

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.002121

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.024330.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.738431
Manapal/WT (break)0.986451
Manapal/WT (red)0.670060.181