Expression of 1-1-4.1.20.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.27835 | 0.255 |
27DAP/17DAP | 1.31091 | 0.801 |
39DAP/27DAP | 1.55658 | 0.363 |
41DAP/39DAP | 0.89777 | 0.552 |
42DAP/41DAP | 0.86117 | 1 |
43DAP/42DAP | 1.04576 | 0.937 |
47DAP/43DAP | 0.92552 | 0.625 |
52DAP/47DAP | 1.71744 | 0.443 |
57DAP/52DAP | 1.06027 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88464 | 0.075 |
17DAP/reference | 0.96952 | 0.474 |
27DAP/reference | 0.92346 | 0.24 |
39DAP/reference | 1.03062 | 0.486 |
41DAP/reference | 1.00574 | 0.963 |
42DAP/reference | 0.94726 | 0.088 |
43DAP/reference | 1.01087 | 0.866 |
47DAP/reference | 0.92138 | 0.025 |
52DAP/reference | 0.93825 | 0.292 |
57DAP/reference | 0.92256 | 0.078 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91001 | 0.219 |
27DAP/17DAP | 0.99222 | 0.943 |
39DAP/27DAP | 1.15712 | 0.314 |
41DAP/39DAP | 0.98937 | 0.997 |
42DAP/41DAP | 1.01544 | 0.929 |
43DAP/42DAP | 1.04016 | 0.664 |
47DAP/43DAP | 1.08198 | 0.827 |
52DAP/47DAP | 1.00704 | 0.962 |
57DAP/52DAP | 1.01282 | 0.978 |
57DAP/7DAP | 1.13799 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04976 | 0.676 |
17DAP/reference | 1.15269 | 0.092 |
27DAP/reference | 1.0257 | 0.804 |
39DAP/reference | 1.23727 | 0.007 |
41DAP/reference | 1.28554 | 0.034 |
42DAP/reference | 1.34347 | 0.007 |
43DAP/reference | 1.50517 | 0.007 |
47DAP/reference | 1.08402 | 0.885 |
52DAP/reference | 1.20452 | 0.011 |
57DAP/reference | 1.24117 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97886 | 0.706 |
17DAP/reference | 0.95114 | 0.317 |
27DAP/reference | 0.88072 | 0.155 |
39DAP/reference | 0.83694 | 0.074 |
41DAP/reference | 0.88327 | 0.188 |
42DAP/reference | 0.87893 | 0.081 |
43DAP/reference | 1.07229 | 0.809 |
47DAP/reference | 1.01336 | 0.994 |
52DAP/reference | 1.02738 | 0.667 |
57DAP/reference | 1.12462 | 0.334 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10228 | 0.356 |
17DAP/reference | 1.08251 | 0.42 |
27DAP/reference | 1.26953 | 0.023 |
39DAP/reference | 1.2526 | 0.015 |
41DAP/reference | 1.18272 | 0.026 |
42DAP/reference | 1.04939 | 0.759 |
43DAP/reference | 1.09757 | 0.828 |
47DAP/reference | 0.92068 | 0.296 |
52DAP/reference | 1.08512 | 0.463 |
57DAP/reference | 0.78046 | 0.12 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91786 | 0.89 |
26DAP/20DAP | 0.94667 | 1 |
34DAP/26DAP | 1.00849 | 1 |
51DAP/34DAP | 1.17239 | 0.251 |
52DAP/51DAP | 1.16627 | 0.281 |
53DAP/52DAP | 1.12097 | 0.594 |
55DAP/53DAP | 1.05745 | 0.653 |
57DAP/55DAP | 1.10566 | 0.818 |
62DAP/57DAP | 1.4127 | 0.133 |
68DAP/62DAP | 0.91524 | 0.609 |
68DAP/14DAP | 0.67241 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.20585 | 0.347 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.76116 | 0.223 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.32745 | 0.081 |
Ripe Pepper/Ripe Tomato | 0.92984 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.82958 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.18694 | 0.551 |
1-1-2/M82 | 0.97782 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.1693 | 0.611 |
1-3/M82 | 0.89394 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96053 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.74925 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.18462 | |
5-3/M82 | 0.98852 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.88884 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.82477 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96478 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01853 | 0.921 |
DC3000/delta hrp 6h | 0.78728 | 0.95 |
DC3000/delta hrp 12h | 1.05768 | 1 |
DC3000/delta hrp 24h | 0.93539 | 0.629 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.57773 | 0.11 |
DC3000 delta B/DC3000 delta AB | 1.09135 | 0.386 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89135 | 1 |
Exp 36h | 1.31305 | 0.489 |
Exp 60h | 1.21374 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99902 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.15874 | 0.22 |
Var 12h NI row2-row1 | 0.99869 | 1 |
Var 36h I row2-row1 | 0.87445 | 0.805 |
Var 36h NI row2-row1 | 1.24707 | 1 |
Var 60h I row2-row1 | 1.18274 | 0.562 |
Var 60h NI row2-row1 | 1.15211 | 0.904 |
Time course 0hI-0hNI | 1.09189 | 0.662 |
Time course 12hI-12hNI | 1.01318 | 0.892 |
Time course 36hI-36hNI | 0.98302 | 0.589 |
Time course 60hI-60hNI | 1.16066 | 0.137 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02487 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 1.02466 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.95938 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00212 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02433 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73843 | 1 |
Manapal/WT (break) | 0.98645 | 1 |
Manapal/WT (red) | 0.67006 | 0.181 |
|
|