Expression of 1-1-4.1.20.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.127430.739
27DAP/17DAP0.992571
39DAP/27DAP0.875050.594
41DAP/39DAP0.917470.69
42DAP/41DAP0.987241
43DAP/42DAP1.054511
47DAP/43DAP0.917710.699
52DAP/47DAP1.259130.515
57DAP/52DAP1.036060.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.459850.024
17DAP/reference0.371260.007
27DAP/reference0.599950.013
39DAP/reference0.981660.828
41DAP/reference0.68360.201
42DAP/reference0.885310.124
43DAP/reference1.020740.82
47DAP/reference0.825930.098
52DAP/reference1.340540.186
57DAP/reference1.22622

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.085480.619
27DAP/17DAP1.067910.798
39DAP/27DAP1.464640.163
41DAP/39DAP1.000231
42DAP/41DAP1.036831
43DAP/42DAP1.116850.746
47DAP/43DAP1.280440.69
52DAP/47DAP1.263220.444
57DAP/52DAP0.925450.603
57DAP/7DAP0.53473

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.81240.034
17DAP/reference2.541070.006
27DAP/reference2.231630.006
39DAP/reference2.847720.005
41DAP/reference3.077780.012
42DAP/reference3.318630.009
43DAP/reference4.772440.006
47DAP/reference2.618150.093
52DAP/reference2.991170.007
57DAP/reference2.812440.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.461270.007
17DAP/reference0.405210.003
27DAP/reference0.811940.111
39DAP/reference0.810610.095
41DAP/reference0.973770.441
42DAP/reference0.980930.534
43DAP/reference0.518670.009
47DAP/reference0.728530.01
52DAP/reference0.752950.006
57DAP/reference0.391490.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.005710.084
17DAP/reference1.325120.924
27DAP/reference3.108630.016
39DAP/reference2.97120.013
41DAP/reference2.157490.01
42DAP/reference2.718370.007
43DAP/reference2.501450.015
47DAP/reference0.916620.296
52DAP/reference2.538560.144
57DAP/reference2.859120.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.099021
26DAP/20DAP1.771190.262
34DAP/26DAP1.139050.819
51DAP/34DAP0.97742
52DAP/51DAP0.803711
53DAP/52DAP1.66080.25
55DAP/53DAP1.657660.164
57DAP/55DAP1.105030.854
62DAP/57DAP1.132281
68DAP/62DAP9.621220.017
68DAP/14DAP14.87610.016

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.982890.635

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.075620.04
Mature Green Tomato/Ripe Tomato0.297110.02
Immature Eggplant/Mature Eggplant1.398320.072
Ripe Pepper/Ripe Tomato5.466340.256
Mature Eggplant/Ripe Tomato0.488120.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.920850.907
1-1-2/M820.899381
12-2/M82N/AN/A
12-4/M820.85530.619
1-3/M820.912620.501
2-1-1/M821.05159
2-1/M821.017491
2-6/M820.951651
3-2/M820.947770.455
4-1-1/M821.061541
4-1/M820.889631
4-3-2/M821.024121
4-3/M821.107531
5-3/M820.936330.642
6-2/M82N/AN/A
6-3/M821.121231
7-1/M820.818110.803
7-2/M820.939570.881
9-3-2/M821.074591

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.120410.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.993131
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.408670.399
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.174990.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.016091
DC3000/delta hrp 6h1.239471
DC3000/delta hrp 12h1.183061
DC3000/delta hrp 24h1.141180.383

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.917321
Exp 36h1.352261
Exp 60h1.372340.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row11.023920.795
Var 12h NI row2-row10.817220.713
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row10.90034
Var 60h I row2-row10.714790.287
Var 60h NI row2-row11.099590.904
Time course 0hI-0hNI1.102180.344
Time course 12hI-12hNI1.252510.392
Time course 36hI-36hNI2.430770.019
Time course 60hI-60hNI5.432120.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.009780.863
transgenic ySAMdc/azygous control (breaker)1.207731
transgenic ySAMdc/azygous control (red)0.989691

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.051480.1

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.882150.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.124210.307
Manapal/WT (break)1.250740.381
Manapal/WT (red)0.853730.181