Expression of 1-1-4.1.3.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.909980.558
27DAP/17DAP1.085760.871
39DAP/27DAP1.167950.725
41DAP/39DAP1.010470.978
42DAP/41DAP0.953091
43DAP/42DAP0.840090.695
47DAP/43DAP1.338660.313
52DAP/47DAP1.220260.649
57DAP/52DAP1.11970.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.032510.76
17DAP/reference1.058670.193
27DAP/reference0.977450.471
39DAP/reference1.017290.771
41DAP/reference0.995791
42DAP/reference1.017180.756
43DAP/reference0.998550.924
47DAP/reference1.152520.002
52DAP/reference1.150480.149
57DAP/reference1.121550.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.752070.17
27DAP/17DAP1.236820.527
39DAP/27DAP0.92780.54
41DAP/39DAP0.952790.893
42DAP/41DAP0.954270.704
43DAP/42DAP0.918260.336
47DAP/43DAP1.031890.93
52DAP/47DAP0.85090.338
57DAP/52DAP0.932310.551
57DAP/7DAP1.410521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.158760.564
17DAP/reference1.122110.477
27DAP/reference1.164590.16
39DAP/reference1.257690.09
41DAP/reference1.139930.171
42DAP/reference1.080910.686
43DAP/reference0.969380.421
47DAP/reference1.158440.571
52DAP/reference1.246510.183
57DAP/reference1.180740.198

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.08130.582
17DAP/reference1.02990.806
27DAP/reference1.123530.463
39DAP/reference1.096530.136
41DAP/reference1.068490.831
42DAP/reference1.036931
43DAP/reference1.090630.453
47DAP/reference0.996570.678
52DAP/reference1.189880.017
57DAP/reference1.110560.2

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.230280.146
17DAP/reference1.067560.775
27DAP/reference1.14210.392
39DAP/reference1.366080.036
41DAP/reference1.274410.134
42DAP/reference1.391790.074
43DAP/reference1.247460.151
47DAP/reference0.862840.069
52DAP/reference1.305730.262
57DAP/reference1.130160.694

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.02680.966
26DAP/20DAP1.266040.464
34DAP/26DAP0.939940.909
51DAP/34DAP0.965230.758
52DAP/51DAP1.052670.842
53DAP/52DAP1.220920.697
55DAP/53DAP1.046410.964
57DAP/55DAP1.010090.953
62DAP/57DAP0.96252
68DAP/62DAP1.016090.939
68DAP/14DAP1.190180.063

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.892860.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.497050.058
Mature Green Tomato/Ripe Tomato1.357310.523
Immature Eggplant/Mature Eggplant0.79220.071
Ripe Pepper/Ripe Tomato0.146050.224
Mature Eggplant/Ripe Tomato0.401230.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.691260.574
1-1-2/M820.92852
12-2/M821.30494
12-4/M820.982651
1-3/M821.459660.26
2-1-1/M821.06566
2-1/M821.59854
2-6/M820.882130.501
3-2/M821.183770.967
4-1-1/M821.236461
4-1/M820.96511
4-3-2/M820.740940.487
4-3/M820.988451
5-3/M821.148491
6-2/M82N/AN/A
6-3/M820.775281
7-1/M821.184550.539
7-2/M821.184630.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.116920.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.96241
DC3000/delta hrp 6h0.89820.95
DC3000/delta hrp 12h1.043821
DC3000/delta hrp 24h1.44020.082

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.25958

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.108581
Exp 36h0.701150.426
Exp 60h0.575880.253

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.927791
Var 12h I row2-row11.043140.204
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row10.927931
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row10.86509
Var 60h NI row2-row10.901240.292
Time course 0hI-0hNI1.092480.799
Time course 12hI-12hNI1.225790.272
Time course 36hI-36hNI1.080870.975
Time course 60hI-60hNI0.900290.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.966070.722
transgenic ySAMdc/azygous control (breaker)0.370280.118
transgenic ySAMdc/azygous control (red)1.407531

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.990260.737

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.884820.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.146860.307
Manapal/WT (break)0.733590.333
Manapal/WT (red)1.064631