Expression of 1-1-4.1.3.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.317510.244
27DAP/17DAP1.028720.92
39DAP/27DAP1.04870.899
41DAP/39DAP1.092420.938
42DAP/41DAP1.078520.967
43DAP/42DAP1.051771
47DAP/43DAP1.041470.889
52DAP/47DAP0.853340.615
57DAP/52DAP1.02640.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.060880.76
17DAP/reference1.055680.33
27DAP/reference1.139750.011
39DAP/reference1.02920.514
41DAP/reference0.933830.341
42DAP/reference0.98620.44
43DAP/reference0.967680.555
47DAP/reference1.060440.167
52DAP/reference0.970240.461
57DAP/reference0.973830.395

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.00311
27DAP/17DAP1.203520.218
39DAP/27DAP0.732610.071
41DAP/39DAP1.137160.531
42DAP/41DAP1.194650.601
43DAP/42DAP1.14540.746
47DAP/43DAP1.076350.865
52DAP/47DAP1.119770.779
57DAP/52DAP0.928170.601
57DAP/7DAP0.892281

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.204150.418
17DAP/reference0.92490.295
27DAP/reference0.949520.53
39DAP/reference1.082490.74
41DAP/reference1.008940.646
42DAP/reference0.911820.275
43DAP/reference1.065551
47DAP/reference0.946080.293
52DAP/reference0.975410.621
57DAP/reference0.886510.207

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.942820.441
17DAP/reference0.982140.576
27DAP/reference0.948790.352
39DAP/reference0.880420.097
41DAP/reference0.948610.231
42DAP/reference0.916620.15
43DAP/reference0.88690.269
47DAP/reference1.039180.218
52DAP/reference0.93430.047
57DAP/reference0.857010.099

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.795460.048
17DAP/reference0.921660.064
27DAP/reference1.215280.357
39DAP/reference1.091350.451
41DAP/reference0.82895
42DAP/reference1.125290.648
43DAP/reference1.120640.688
47DAP/reference1.122970.294
52DAP/reference0.748760.193
57DAP/reference1.071750.604

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.982751
26DAP/20DAP0.777050.512
34DAP/26DAP0.861740.584
51DAP/34DAP1.739920.524
52DAP/51DAP0.917991
53DAP/52DAP1.428390.064
55DAP/53DAP1.121350.927
57DAP/55DAP1.059820.975
62DAP/57DAP1.243930.622
68DAP/62DAP0.933420.787
68DAP/14DAP1.075750.826

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.067910.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.212950.113
Mature Green Tomato/Ripe Tomato1.461050.053
Immature Eggplant/Mature Eggplant0.651660.066
Ripe Pepper/Ripe Tomato1.365871
Mature Eggplant/Ripe Tomato0.990391

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.051311
1-1-2/M821.345240.891
12-2/M820.75048
12-4/M820.97031
1-3/M821.1379
2-1-1/M820.98285
2-1/M821.17286
2-6/M821.068831
3-2/M821.345
4-1-1/M820.966021
4-1/M821.7925
4-3-2/M821.243180.508
4-3/M821.208331
5-3/M820.970331
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.96241
7-2/M821.09301
9-3-2/M821.015591

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.072050.277
IL2-6/WTpooled1.044060.531
IL7-5/WTpooled1.340970.792
IL7-3/WTpooled1.105151
IL12-4/WTpooled1.211490.785
IL1-4/WTpooled0.995771
WT/WTpooled0.901761

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.146191

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.969361
DC3000/delta hrp 6h0.761430.95
DC3000/delta hrp 12h1.082851
DC3000/delta hrp 24h0.804880.058

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.09532
DC3000 delta B/DC3000 delta AB0.715540.152

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.249881
Exp 36h1.21341
Exp 60h1.113211

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.825530.255
Var 12h I row2-row11.07363
Var 12h NI row2-row10.68587
Var 36h I row2-row10.92063
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row11.06866
Var 60h NI row2-row10.523981
Time course 0hI-0hNI1.044830.799
Time course 12hI-12hNI0.950.745
Time course 36hI-36hNI1.035490.799
Time course 60hI-60hNI0.690350.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.942130.567
transgenic ySAMdc/azygous control (breaker)1.372150.248
transgenic ySAMdc/azygous control (red)2.562680.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.099730.204

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.667480.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.255060.096
Manapal/WT (break)2.082170.381
Manapal/WT (red)2.26160.126