Expression of 1-1-4.1.4.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.05880.798
27DAP/17DAP1.110370.857
39DAP/27DAP1.065850.885
41DAP/39DAP1.000080.982
42DAP/41DAP0.92611
43DAP/42DAP1.004120.937
47DAP/43DAP1.167130.542
52DAP/47DAP0.897050.695
57DAP/52DAP1.0141

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.994990.743
17DAP/reference1.036280.442
27DAP/reference0.993640.763
39DAP/reference1.040540.27
41DAP/reference1.013850.91
42DAP/reference0.994610.484
43DAP/reference1.04790.252
47DAP/reference1.0071
52DAP/reference0.965290.393
57DAP/reference1.065940.088

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.919260.251
27DAP/17DAP1.02380.909
39DAP/27DAP1.023950.691
41DAP/39DAP0.978060.945
42DAP/41DAP0.965450.589
43DAP/42DAP1.066490.052
47DAP/43DAP1.040190.572
52DAP/47DAP0.941160.565
57DAP/52DAP0.896820.152
57DAP/7DAP0.9481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.943220.138
17DAP/reference0.931940.025
27DAP/reference0.944040.076
39DAP/reference0.984350.354
41DAP/reference0.968580.04
42DAP/reference1.045240.534
43DAP/reference0.961980.305
47DAP/reference0.9820.504
52DAP/reference0.961710.106
57DAP/reference0.93580.016

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.007080.903
17DAP/reference1.025280.859
27DAP/reference1.011541
39DAP/reference1.009161
41DAP/reference1.455950.301
42DAP/reference1.060620.794
43DAP/reference1.020670.874
47DAP/reference0.941210.145
52DAP/reference1.020270.471
57DAP/reference1.037520.155

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.017770.793
17DAP/reference0.968220.374
27DAP/reference0.950020.14
39DAP/reference0.947060.011
41DAP/reference0.964110.264
42DAP/reference0.88220.041
43DAP/reference0.988350.614
47DAP/reference0.965350.296
52DAP/reference0.926120.303
57DAP/reference0.934940.122

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.013480.966
26DAP/20DAP1.045920.941
34DAP/26DAP0.93130.627
51DAP/34DAP1.007720.978
52DAP/51DAP0.938711
53DAP/52DAP1.012441
55DAP/53DAP0.92470.544
57DAP/55DAP1.140960.826
62DAP/57DAP0.83364
68DAP/62DAP0.940110.787
68DAP/14DAP1.05210.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.081830.415

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.931890.563
Mature Green Tomato/Ripe Tomato1.026250.881
Immature Eggplant/Mature Eggplant1.437640.05
Ripe Pepper/Ripe Tomato2.130071
Mature Eggplant/Ripe Tomato1.683590.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.944640.944
1-1-2/M820.939441
12-2/M820.864270.955
12-4/M820.980971
1-3/M820.942690.378
2-1-1/M820.911260.465
2-1/M821.112131
2-6/M820.970781
3-2/M821.042150.84
4-1-1/M821.010811
4-1/M820.786161
4-3-2/M821.162130.262
4-3/M820.943321
5-3/M820.980351
6-2/M821.03551
6-3/M821.016581
7-1/M821.062340.992
7-2/M820.916120.796
9-3-2/M820.912790.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.56422
IL2-6/WTpooled0.842930.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.166090.362
IL12-4/WTpooled1.065840.737
IL1-4/WTpooled0.9903
WT/WTpooled0.93771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.964421

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.082930.823
DC3000/delta hrp 6h1.138781
DC3000/delta hrp 12h0.910731
DC3000/delta hrp 24h1.016730.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.992481
DC3000 delta B/DC3000 delta AB1.100220.368

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.156371
Exp 36h0.952010.749
Exp 60h1.051111

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.058250.98
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.986080.722
transgenic ySAMdc/azygous control (breaker)1.0671
transgenic ySAMdc/azygous control (red)0.934081

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.963570.058

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.704640.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.992211
Manapal/WT (break)0.879910.333
Manapal/WT (red)0.948440.728