Expression of 1-1-4.1.4.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0588 | 0.798 |
27DAP/17DAP | 1.11037 | 0.857 |
39DAP/27DAP | 1.06585 | 0.885 |
41DAP/39DAP | 1.00008 | 0.982 |
42DAP/41DAP | 0.9261 | 1 |
43DAP/42DAP | 1.00412 | 0.937 |
47DAP/43DAP | 1.16713 | 0.542 |
52DAP/47DAP | 0.89705 | 0.695 |
57DAP/52DAP | 1.014 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99499 | 0.743 |
17DAP/reference | 1.03628 | 0.442 |
27DAP/reference | 0.99364 | 0.763 |
39DAP/reference | 1.04054 | 0.27 |
41DAP/reference | 1.01385 | 0.91 |
42DAP/reference | 0.99461 | 0.484 |
43DAP/reference | 1.0479 | 0.252 |
47DAP/reference | 1.007 | 1 |
52DAP/reference | 0.96529 | 0.393 |
57DAP/reference | 1.06594 | 0.088 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91926 | 0.251 |
27DAP/17DAP | 1.0238 | 0.909 |
39DAP/27DAP | 1.02395 | 0.691 |
41DAP/39DAP | 0.97806 | 0.945 |
42DAP/41DAP | 0.96545 | 0.589 |
43DAP/42DAP | 1.06649 | 0.052 |
47DAP/43DAP | 1.04019 | 0.572 |
52DAP/47DAP | 0.94116 | 0.565 |
57DAP/52DAP | 0.89682 | 0.152 |
57DAP/7DAP | 0.948 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94322 | 0.138 |
17DAP/reference | 0.93194 | 0.025 |
27DAP/reference | 0.94404 | 0.076 |
39DAP/reference | 0.98435 | 0.354 |
41DAP/reference | 0.96858 | 0.04 |
42DAP/reference | 1.04524 | 0.534 |
43DAP/reference | 0.96198 | 0.305 |
47DAP/reference | 0.982 | 0.504 |
52DAP/reference | 0.96171 | 0.106 |
57DAP/reference | 0.9358 | 0.016 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00708 | 0.903 |
17DAP/reference | 1.02528 | 0.859 |
27DAP/reference | 1.01154 | 1 |
39DAP/reference | 1.00916 | 1 |
41DAP/reference | 1.45595 | 0.301 |
42DAP/reference | 1.06062 | 0.794 |
43DAP/reference | 1.02067 | 0.874 |
47DAP/reference | 0.94121 | 0.145 |
52DAP/reference | 1.02027 | 0.471 |
57DAP/reference | 1.03752 | 0.155 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01777 | 0.793 |
17DAP/reference | 0.96822 | 0.374 |
27DAP/reference | 0.95002 | 0.14 |
39DAP/reference | 0.94706 | 0.011 |
41DAP/reference | 0.96411 | 0.264 |
42DAP/reference | 0.8822 | 0.041 |
43DAP/reference | 0.98835 | 0.614 |
47DAP/reference | 0.96535 | 0.296 |
52DAP/reference | 0.92612 | 0.303 |
57DAP/reference | 0.93494 | 0.122 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01348 | 0.966 |
26DAP/20DAP | 1.04592 | 0.941 |
34DAP/26DAP | 0.9313 | 0.627 |
51DAP/34DAP | 1.00772 | 0.978 |
52DAP/51DAP | 0.93871 | 1 |
53DAP/52DAP | 1.01244 | 1 |
55DAP/53DAP | 0.9247 | 0.544 |
57DAP/55DAP | 1.14096 | 0.826 |
62DAP/57DAP | 0.83364 | |
68DAP/62DAP | 0.94011 | 0.787 |
68DAP/14DAP | 1.0521 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.08183 | 0.415 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.93189 | 0.563 |
Mature Green Tomato/Ripe Tomato | 1.02625 | 0.881 |
Immature Eggplant/Mature Eggplant | 1.43764 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.13007 | 1 |
Mature Eggplant/Ripe Tomato | 1.68359 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94464 | 0.944 |
1-1-2/M82 | 0.93944 | 1 |
12-2/M82 | 0.86427 | 0.955 |
12-4/M82 | 0.98097 | 1 |
1-3/M82 | 0.94269 | 0.378 |
2-1-1/M82 | 0.91126 | 0.465 |
2-1/M82 | 1.11213 | 1 |
2-6/M82 | 0.97078 | 1 |
3-2/M82 | 1.04215 | 0.84 |
4-1-1/M82 | 1.01081 | 1 |
4-1/M82 | 0.78616 | 1 |
4-3-2/M82 | 1.16213 | 0.262 |
4-3/M82 | 0.94332 | 1 |
5-3/M82 | 0.98035 | 1 |
6-2/M82 | 1.0355 | 1 |
6-3/M82 | 1.01658 | 1 |
7-1/M82 | 1.06234 | 0.992 |
7-2/M82 | 0.91612 | 0.796 |
9-3-2/M82 | 0.91279 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.56422 | |
IL2-6/WTpooled | 0.84293 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.16609 | 0.362 |
IL12-4/WTpooled | 1.06584 | 0.737 |
IL1-4/WTpooled | 0.9903 | |
WT/WTpooled | 0.9377 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96442 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08293 | 0.823 |
DC3000/delta hrp 6h | 1.13878 | 1 |
DC3000/delta hrp 12h | 0.91073 | 1 |
DC3000/delta hrp 24h | 1.01673 | 0.69 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.99248 | 1 |
DC3000 delta B/DC3000 delta AB | 1.10022 | 0.368 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15637 | 1 |
Exp 36h | 0.95201 | 0.749 |
Exp 60h | 1.05111 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.05825 | 0.98 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98608 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.067 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93408 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96357 | 0.058 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.70464 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.99221 | 1 |
Manapal/WT (break) | 0.87991 | 0.333 |
Manapal/WT (red) | 0.94844 | 0.728 |
|
|