Expression of 1-1-4.1.4.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.58971 | 0.02 |
27DAP/17DAP | 1.1354 | 0.905 |
39DAP/27DAP | 1.08048 | 1 |
41DAP/39DAP | 0.89061 | 0.552 |
42DAP/41DAP | 1.05972 | 0.997 |
43DAP/42DAP | 0.97087 | 0.91 |
47DAP/43DAP | 0.90684 | 0.66 |
52DAP/47DAP | 1.55186 | 0.483 |
57DAP/52DAP | 1.24805 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1029 | 0.147 |
17DAP/reference | 0.88232 | 0.129 |
27DAP/reference | 0.92138 | 0.194 |
39DAP/reference | 0.83223 | 0.132 |
41DAP/reference | 0.896 | 0.201 |
42DAP/reference | 0.97661 | 0.384 |
43DAP/reference | 1.05605 | 0.425 |
47DAP/reference | 1.08655 | 0.295 |
52DAP/reference | 1.04573 | 1 |
57DAP/reference | 1.23207 | 0.017 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03779 | 0.923 |
27DAP/17DAP | 1.04739 | 0.867 |
39DAP/27DAP | 0.77875 | 0.118 |
41DAP/39DAP | 1.21786 | 0.276 |
42DAP/41DAP | 0.86176 | 0.056 |
43DAP/42DAP | 0.84122 | 0.121 |
47DAP/43DAP | 1.07882 | 0.708 |
52DAP/47DAP | 0.93165 | 0.66 |
57DAP/52DAP | 1.34482 | 0.357 |
57DAP/7DAP | 0.73127 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.69256 | 0.03 |
17DAP/reference | 1.3774 | 0.006 |
27DAP/reference | 1.19836 | 0.015 |
39DAP/reference | 1.38948 | 0.007 |
41DAP/reference | 1.26914 | 0.121 |
42DAP/reference | 1.38047 | 0.009 |
43DAP/reference | 1.28541 | 0.011 |
47DAP/reference | 1.36792 | 0.015 |
52DAP/reference | 1.48631 | 0.008 |
57DAP/reference | 1.64677 | 0.024 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07616 | 0.679 |
17DAP/reference | 0.99908 | 0.805 |
27DAP/reference | 1.05515 | 0.682 |
39DAP/reference | 1.08735 | 0.424 |
41DAP/reference | 1.01403 | 1 |
42DAP/reference | 1.23107 | 0.433 |
43DAP/reference | 0.92315 | 0.361 |
47DAP/reference | 1.17684 | 0.065 |
52DAP/reference | 0.85565 | 0.06 |
57DAP/reference | 0.90404 | 0.194 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.443 | 0.024 |
17DAP/reference | 1.06594 | 0.792 |
27DAP/reference | 1.28073 | 0.049 |
39DAP/reference | 1.32708 | 0.015 |
41DAP/reference | 1.16582 | 0.439 |
42DAP/reference | 1.32801 | 0.039 |
43DAP/reference | 1.3577 | 0.046 |
47DAP/reference | 1.09869 | 0.372 |
52DAP/reference | 1.38849 | 0.06 |
57DAP/reference | 1.30298 | 0.086 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10649 | 0.966 |
26DAP/20DAP | 1.20352 | 0.512 |
34DAP/26DAP | 0.80802 | 0.18 |
51DAP/34DAP | 1.18827 | 0.55 |
52DAP/51DAP | 0.92875 | 1 |
53DAP/52DAP | 1.2891 | 0.284 |
55DAP/53DAP | 0.91426 | 0.619 |
57DAP/55DAP | 1.15279 | 0.87 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.29302 | 0.808 |
68DAP/14DAP | 1.12572 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18681 | 0.415 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.03027 | 1 |
Mature Green Tomato/Ripe Tomato | 0.87672 | 0.377 |
Immature Eggplant/Mature Eggplant | 1.02772 | 0.58 |
Ripe Pepper/Ripe Tomato | 0.90683 | 1 |
Mature Eggplant/Ripe Tomato | 1.01442 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08496 | 0.877 |
1-1-2/M82 | 1.19735 | 1 |
12-2/M82 | 0.73959 | 0.862 |
12-4/M82 | 1.0653 | 1 |
1-3/M82 | 1.64688 | 0.26 |
2-1-1/M82 | 1.16154 | 0.764 |
2-1/M82 | 1.02542 | |
2-6/M82 | 1.0245 | 0.695 |
3-2/M82 | 1.31803 | |
4-1-1/M82 | 0.80744 | 0.959 |
4-1/M82 | 0.65464 | |
4-3-2/M82 | 1.38435 | 0.508 |
4-3/M82 | 1.27061 | 1 |
5-3/M82 | 1.23356 | 1 |
6-2/M82 | 1.15933 | |
6-3/M82 | 0.60714 | |
7-1/M82 | 1.05294 | 1 |
7-2/M82 | 1.26927 | 0.385 |
9-3-2/M82 | 0.90006 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00927 | 1 |
IL2-6/WTpooled | 1.03836 | 0.788 |
IL7-5/WTpooled | 1.34053 | 0.722 |
IL7-3/WTpooled | 1.00356 | 1 |
IL12-4/WTpooled | 1.21726 | 0.531 |
IL1-4/WTpooled | 0.8304 | 0.562 |
WT/WTpooled | 1.02414 | 0.855 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04915 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01345 | 1 |
DC3000/delta hrp 6h | 1.4086 | 1 |
DC3000/delta hrp 12h | 1.21684 | 1 |
DC3000/delta hrp 24h | 0.71383 | 0.035 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.78292 | |
DC3000 delta B/DC3000 delta AB | 1.79865 | 0.234 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.01379 | 1 |
Exp 36h | 0.93521 | 0.879 |
Exp 60h | 0.99549 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.02609 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.77197 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.89381 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.98433 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0908 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92775 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.20922 | 0.093 |
Manapal/WT (break) | 1.03069 | 1 |
Manapal/WT (red) | 1.29019 | 0.413 |
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