Expression of 1-1-4.1.4.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.589710.02
27DAP/17DAP1.13540.905
39DAP/27DAP1.080481
41DAP/39DAP0.890610.552
42DAP/41DAP1.059720.997
43DAP/42DAP0.970870.91
47DAP/43DAP0.906840.66
52DAP/47DAP1.551860.483
57DAP/52DAP1.248050.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.10290.147
17DAP/reference0.882320.129
27DAP/reference0.921380.194
39DAP/reference0.832230.132
41DAP/reference0.8960.201
42DAP/reference0.976610.384
43DAP/reference1.056050.425
47DAP/reference1.086550.295
52DAP/reference1.045731
57DAP/reference1.232070.017

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.037790.923
27DAP/17DAP1.047390.867
39DAP/27DAP0.778750.118
41DAP/39DAP1.217860.276
42DAP/41DAP0.861760.056
43DAP/42DAP0.841220.121
47DAP/43DAP1.078820.708
52DAP/47DAP0.931650.66
57DAP/52DAP1.344820.357
57DAP/7DAP0.731271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.692560.03
17DAP/reference1.37740.006
27DAP/reference1.198360.015
39DAP/reference1.389480.007
41DAP/reference1.269140.121
42DAP/reference1.380470.009
43DAP/reference1.285410.011
47DAP/reference1.367920.015
52DAP/reference1.486310.008
57DAP/reference1.646770.024

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.076160.679
17DAP/reference0.999080.805
27DAP/reference1.055150.682
39DAP/reference1.087350.424
41DAP/reference1.014031
42DAP/reference1.231070.433
43DAP/reference0.923150.361
47DAP/reference1.176840.065
52DAP/reference0.855650.06
57DAP/reference0.904040.194

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.4430.024
17DAP/reference1.065940.792
27DAP/reference1.280730.049
39DAP/reference1.327080.015
41DAP/reference1.165820.439
42DAP/reference1.328010.039
43DAP/reference1.35770.046
47DAP/reference1.098690.372
52DAP/reference1.388490.06
57DAP/reference1.302980.086

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.106490.966
26DAP/20DAP1.203520.512
34DAP/26DAP0.808020.18
51DAP/34DAP1.188270.55
52DAP/51DAP0.928751
53DAP/52DAP1.28910.284
55DAP/53DAP0.914260.619
57DAP/55DAP1.152790.87
62DAP/57DAPN/AN/A
68DAP/62DAP1.293020.808
68DAP/14DAP1.125720.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.186810.415

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.030271
Mature Green Tomato/Ripe Tomato0.876720.377
Immature Eggplant/Mature Eggplant1.027720.58
Ripe Pepper/Ripe Tomato0.906831
Mature Eggplant/Ripe Tomato1.014421

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.084960.877
1-1-2/M821.197351
12-2/M820.739590.862
12-4/M821.06531
1-3/M821.646880.26
2-1-1/M821.161540.764
2-1/M821.02542
2-6/M821.02450.695
3-2/M821.31803
4-1-1/M820.807440.959
4-1/M820.65464
4-3-2/M821.384350.508
4-3/M821.270611
5-3/M821.233561
6-2/M821.15933
6-3/M820.60714
7-1/M821.052941
7-2/M821.269270.385
9-3-2/M820.90006

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.009271
IL2-6/WTpooled1.038360.788
IL7-5/WTpooled1.340530.722
IL7-3/WTpooled1.003561
IL12-4/WTpooled1.217260.531
IL1-4/WTpooled0.83040.562
WT/WTpooled1.024140.855

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.049151

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.013451
DC3000/delta hrp 6h1.40861
DC3000/delta hrp 12h1.216841
DC3000/delta hrp 24h0.713830.035

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.78292
DC3000 delta B/DC3000 delta AB1.798650.234

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.013791
Exp 36h0.935210.879
Exp 60h0.995490.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.026091
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.771970.246
transgenic ySAMdc/azygous control (breaker)0.893810.49
transgenic ySAMdc/azygous control (red)0.984331

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.09080.317

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.927750.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.209220.093
Manapal/WT (break)1.030691
Manapal/WT (red)1.290190.413