Expression of 1-1-4.1.5.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.819990.29
27DAP/17DAP0.984290.996
39DAP/27DAP1.083390.938
41DAP/39DAP1.132110.708
42DAP/41DAP1.22470.899
43DAP/42DAP1.01560.937
47DAP/43DAP0.909080.68
52DAP/47DAP1.184720.662
57DAP/52DAP0.948550.936

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.015970.872
17DAP/reference0.968610.536
27DAP/reference0.969490.428
39DAP/reference0.971640.565
41DAP/reference0.975230.667
42DAP/reference1.034050.159
43DAP/reference1.022010.866
47DAP/reference0.918860.071
52DAP/reference0.826230.024
57DAP/reference0.814640.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.023370.923
27DAP/17DAP1.048640.905
39DAP/27DAP1.053630.626
41DAP/39DAP0.99460.997
42DAP/41DAP1.105140.436
43DAP/42DAP1.004181
47DAP/43DAP0.981390.909
52DAP/47DAP1.070840.718
57DAP/52DAP1.108020.405
57DAP/7DAP1.014171

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.001661
17DAP/reference0.936390.028
27DAP/reference0.931940.048
39DAP/reference0.932630.023
41DAP/reference0.84030.018
42DAP/reference0.808650.01
43DAP/reference0.917110.069
47DAP/reference1.015981
52DAP/reference0.877790.066
57DAP/reference0.809840.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.039920.589
17DAP/reference0.948390.269
27DAP/reference1.066570.297
39DAP/reference0.990160.539
41DAP/reference0.952880.364
42DAP/reference0.943330.061
43DAP/reference0.962250.45
47DAP/reference0.930920.085
52DAP/reference0.985560.537
57DAP/reference0.930730.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.121590.196
17DAP/reference1.032660.62
27DAP/reference0.96740.23
39DAP/reference0.967910.299
41DAP/reference0.911330.086
42DAP/reference1.066010.34
43DAP/reference0.987510.639
47DAP/reference0.897580.125
52DAP/reference0.980780.704
57DAP/reference0.797640.027

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.009071
26DAP/20DAP1.418630.374
34DAP/26DAP0.979280.972
51DAP/34DAP0.978070.844
52DAP/51DAP1.479060.041
53DAP/52DAP0.951010.758
55DAP/53DAP1.091160.319
57DAP/55DAP0.818970.246
62DAP/57DAP1.56491
68DAP/62DAP0.949560.787
68DAP/14DAP1.048630.694

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.363620.068

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.54280.058
Mature Green Tomato/Ripe Tomato1.341140.185
Immature Eggplant/Mature Eggplant3.356150.05
Ripe Pepper/Ripe Tomato0.221830.224
Mature Eggplant/Ripe Tomato0.680691

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.094450.551
1-1-2/M821.24521
12-2/M820.978731
12-4/M821.185161
1-3/M821.555570.248
2-1-1/M821.015151
2-1/M820.94590.322
2-6/M821.041010.364
3-2/M821.138920.443
4-1-1/M821.059371
4-1/M821.07489
4-3-2/M821.072940.253
4-3/M821.075911
5-3/M820.968110.642
6-2/M821.03852
6-3/M821.100131
7-1/M821.035651
7-2/M821.314690.324
9-3-2/M821.12771

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.018781
IL2-6/WTpooled0.924861
IL7-5/WTpooled1.84728
IL7-3/WTpooled1.22503
IL12-4/WTpooled0.813070.581
IL1-4/WTpooled0.95350.834
WT/WTpooled1.069791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.548140.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.046260.921
DC3000/delta hrp 6h0.891480.95
DC3000/delta hrp 12h0.832271
DC3000/delta hrp 24h1.448910.043

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.267470.042
DC3000 delta B/DC3000 delta AB1.230140.181

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.066551
Exp 36h1.73440.489
Exp 60h1.55660.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.023231
Var 0h0.898461
Var 12h I row2-row10.953840.514
Var 12h NI row2-row11.00771
Var 36h I row2-row11.054661
Var 36h NI row2-row10.966280.743
Var 60h I row2-row10.727640.285
Var 60h NI row2-row11.02741
Time course 0hI-0hNI0.999591
Time course 12hI-12hNI1.070440.633
Time course 36hI-36hNI1.314720.005
Time course 60hI-60hNI2.701970.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.951610.662
transgenic ySAMdc/azygous control (breaker)1.172830.172
transgenic ySAMdc/azygous control (red)1.004921

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.960820.323

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.843690.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.965421
Manapal/WT (break)0.875181
Manapal/WT (red)0.905980.424