Expression of 1-1-4.1.5.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81999 | 0.29 |
27DAP/17DAP | 0.98429 | 0.996 |
39DAP/27DAP | 1.08339 | 0.938 |
41DAP/39DAP | 1.13211 | 0.708 |
42DAP/41DAP | 1.2247 | 0.899 |
43DAP/42DAP | 1.0156 | 0.937 |
47DAP/43DAP | 0.90908 | 0.68 |
52DAP/47DAP | 1.18472 | 0.662 |
57DAP/52DAP | 0.94855 | 0.936 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01597 | 0.872 |
17DAP/reference | 0.96861 | 0.536 |
27DAP/reference | 0.96949 | 0.428 |
39DAP/reference | 0.97164 | 0.565 |
41DAP/reference | 0.97523 | 0.667 |
42DAP/reference | 1.03405 | 0.159 |
43DAP/reference | 1.02201 | 0.866 |
47DAP/reference | 0.91886 | 0.071 |
52DAP/reference | 0.82623 | 0.024 |
57DAP/reference | 0.81464 | 0.023 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02337 | 0.923 |
27DAP/17DAP | 1.04864 | 0.905 |
39DAP/27DAP | 1.05363 | 0.626 |
41DAP/39DAP | 0.9946 | 0.997 |
42DAP/41DAP | 1.10514 | 0.436 |
43DAP/42DAP | 1.00418 | 1 |
47DAP/43DAP | 0.98139 | 0.909 |
52DAP/47DAP | 1.07084 | 0.718 |
57DAP/52DAP | 1.10802 | 0.405 |
57DAP/7DAP | 1.01417 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00166 | 1 |
17DAP/reference | 0.93639 | 0.028 |
27DAP/reference | 0.93194 | 0.048 |
39DAP/reference | 0.93263 | 0.023 |
41DAP/reference | 0.8403 | 0.018 |
42DAP/reference | 0.80865 | 0.01 |
43DAP/reference | 0.91711 | 0.069 |
47DAP/reference | 1.01598 | 1 |
52DAP/reference | 0.87779 | 0.066 |
57DAP/reference | 0.80984 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03992 | 0.589 |
17DAP/reference | 0.94839 | 0.269 |
27DAP/reference | 1.06657 | 0.297 |
39DAP/reference | 0.99016 | 0.539 |
41DAP/reference | 0.95288 | 0.364 |
42DAP/reference | 0.94333 | 0.061 |
43DAP/reference | 0.96225 | 0.45 |
47DAP/reference | 0.93092 | 0.085 |
52DAP/reference | 0.98556 | 0.537 |
57DAP/reference | 0.93073 | 0.135 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12159 | 0.196 |
17DAP/reference | 1.03266 | 0.62 |
27DAP/reference | 0.9674 | 0.23 |
39DAP/reference | 0.96791 | 0.299 |
41DAP/reference | 0.91133 | 0.086 |
42DAP/reference | 1.06601 | 0.34 |
43DAP/reference | 0.98751 | 0.639 |
47DAP/reference | 0.89758 | 0.125 |
52DAP/reference | 0.98078 | 0.704 |
57DAP/reference | 0.79764 | 0.027 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00907 | 1 |
26DAP/20DAP | 1.41863 | 0.374 |
34DAP/26DAP | 0.97928 | 0.972 |
51DAP/34DAP | 0.97807 | 0.844 |
52DAP/51DAP | 1.47906 | 0.041 |
53DAP/52DAP | 0.95101 | 0.758 |
55DAP/53DAP | 1.09116 | 0.319 |
57DAP/55DAP | 0.81897 | 0.246 |
62DAP/57DAP | 1.56491 | |
68DAP/62DAP | 0.94956 | 0.787 |
68DAP/14DAP | 1.04863 | 0.694 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.36362 | 0.068 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.5428 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.34114 | 0.185 |
Immature Eggplant/Mature Eggplant | 3.35615 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.22183 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.68069 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09445 | 0.551 |
1-1-2/M82 | 1.24521 | |
12-2/M82 | 0.97873 | 1 |
12-4/M82 | 1.18516 | 1 |
1-3/M82 | 1.55557 | 0.248 |
2-1-1/M82 | 1.01515 | 1 |
2-1/M82 | 0.9459 | 0.322 |
2-6/M82 | 1.04101 | 0.364 |
3-2/M82 | 1.13892 | 0.443 |
4-1-1/M82 | 1.05937 | 1 |
4-1/M82 | 1.07489 | |
4-3-2/M82 | 1.07294 | 0.253 |
4-3/M82 | 1.07591 | 1 |
5-3/M82 | 0.96811 | 0.642 |
6-2/M82 | 1.03852 | |
6-3/M82 | 1.10013 | 1 |
7-1/M82 | 1.03565 | 1 |
7-2/M82 | 1.31469 | 0.324 |
9-3-2/M82 | 1.1277 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01878 | 1 |
IL2-6/WTpooled | 0.92486 | 1 |
IL7-5/WTpooled | 1.84728 | |
IL7-3/WTpooled | 1.22503 | |
IL12-4/WTpooled | 0.81307 | 0.581 |
IL1-4/WTpooled | 0.9535 | 0.834 |
WT/WTpooled | 1.06979 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.54814 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04626 | 0.921 |
DC3000/delta hrp 6h | 0.89148 | 0.95 |
DC3000/delta hrp 12h | 0.83227 | 1 |
DC3000/delta hrp 24h | 1.44891 | 0.043 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.26747 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.23014 | 0.181 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06655 | 1 |
Exp 36h | 1.7344 | 0.489 |
Exp 60h | 1.5566 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02323 | 1 |
Var 0h | 0.89846 | 1 |
Var 12h I row2-row1 | 0.95384 | 0.514 |
Var 12h NI row2-row1 | 1.0077 | 1 |
Var 36h I row2-row1 | 1.05466 | 1 |
Var 36h NI row2-row1 | 0.96628 | 0.743 |
Var 60h I row2-row1 | 0.72764 | 0.285 |
Var 60h NI row2-row1 | 1.0274 | 1 |
Time course 0hI-0hNI | 0.99959 | 1 |
Time course 12hI-12hNI | 1.07044 | 0.633 |
Time course 36hI-36hNI | 1.31472 | 0.005 |
Time course 60hI-60hNI | 2.70197 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95161 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 1.17283 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.00492 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96082 | 0.323 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.84369 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.96542 | 1 |
Manapal/WT (break) | 0.87518 | 1 |
Manapal/WT (red) | 0.90598 | 0.424 |
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