Expression of 1-1-4.1.6.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.945230.671
27DAP/17DAP0.717540.179
39DAP/27DAP0.732580.253
41DAP/39DAP1.35520.088
42DAP/41DAP0.889161
43DAP/42DAP1.353450.349
47DAP/43DAP1.188960.394
52DAP/47DAP0.806620.534
57DAP/52DAP1.012140.982

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.990410.562
17DAP/reference1.032870.104
27DAP/reference1.032960.709
39DAP/reference0.908150.324
41DAP/reference0.837350.267
42DAP/reference0.968250.326
43DAP/reference1.013580.899
47DAP/reference0.866520.013
52DAP/reference0.888890.047
57DAP/reference1.01561

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.060090.642
27DAP/17DAP1.060310.954
39DAP/27DAP1.039961
41DAP/39DAP1.041910.849
42DAP/41DAP1.023051
43DAP/42DAP1.013471
47DAP/43DAP0.982680.911
52DAP/47DAP0.923950.472
57DAP/52DAP0.929090.56
57DAP/7DAP0.899861

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.163240.399
17DAP/reference1.06231
27DAP/reference1.013111
39DAP/reference0.933410.264
41DAP/reference0.967460.449
42DAP/reference0.908650.211
43DAP/reference1.253790.124
47DAP/reference0.895860.383
52DAP/reference1.118190.401
57DAP/reference1.192630.268

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914840.296
17DAP/reference0.901120.223
27DAP/reference0.887040.195
39DAP/reference0.872170.11
41DAP/reference0.985340.505
42DAP/reference1.055020.697
43DAP/reference0.851650.087
47DAP/reference1.014220.994
52DAP/reference0.905730.38
57DAP/reference0.811970.208

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.152660.079
17DAP/reference0.999590.751
27DAP/reference1.291030.143
39DAP/reference1.190280.235
41DAP/reference1.09470.637
42DAP/reference0.774730.361
43DAP/reference1.350070.388
47DAP/reference0.919750.335
52DAP/reference1.005820.663
57DAP/reference1.082080.491

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.904940.997
26DAP/20DAP1.234840.415
34DAP/26DAP1.076181
51DAP/34DAP0.792260.152
52DAP/51DAP0.900771
53DAP/52DAP0.824450.649
55DAP/53DAP0.912620.544
57DAP/55DAP1.185930.682
62DAP/57DAPN/AN/A
68DAP/62DAP1.293350.455
68DAP/14DAP0.5967

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.275361

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato9.666830.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.9240.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.986721
IL12-4/WTpooled0.870010.52
IL1-4/WTpooled1.111541
WT/WTpooled0.920591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.289280.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.935610.063
DC3000/delta hrp 6h1.113930.95
DC3000/delta hrp 12h1.270571
DC3000/delta hrp 24h1.217360.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.156170.693
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.985681
Var 0h1.123611
Var 12h I row2-row10.904670.514
Var 12h NI row2-row11.104140.649
Var 36h I row2-row11.088331
Var 36h NI row2-row11.412141
Var 60h I row2-row10.9730.952
Var 60h NI row2-row10.728790.302
Time course 0hI-0hNI0.912330.23
Time course 12hI-12hNI0.99881
Time course 36hI-36hNI0.98140.589
Time course 60hI-60hNI1.471150.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.969430.662
transgenic ySAMdc/azygous control (breaker)1.344550.178
transgenic ySAMdc/azygous control (red)0.879641

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.953160.263

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.261890.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.8991
Manapal/WT (break)1.156641
Manapal/WT (red)1.110561