Expression of 1-1-4.1.6.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94523 | 0.671 |
27DAP/17DAP | 0.71754 | 0.179 |
39DAP/27DAP | 0.73258 | 0.253 |
41DAP/39DAP | 1.3552 | 0.088 |
42DAP/41DAP | 0.88916 | 1 |
43DAP/42DAP | 1.35345 | 0.349 |
47DAP/43DAP | 1.18896 | 0.394 |
52DAP/47DAP | 0.80662 | 0.534 |
57DAP/52DAP | 1.01214 | 0.982 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99041 | 0.562 |
17DAP/reference | 1.03287 | 0.104 |
27DAP/reference | 1.03296 | 0.709 |
39DAP/reference | 0.90815 | 0.324 |
41DAP/reference | 0.83735 | 0.267 |
42DAP/reference | 0.96825 | 0.326 |
43DAP/reference | 1.01358 | 0.899 |
47DAP/reference | 0.86652 | 0.013 |
52DAP/reference | 0.88889 | 0.047 |
57DAP/reference | 1.0156 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06009 | 0.642 |
27DAP/17DAP | 1.06031 | 0.954 |
39DAP/27DAP | 1.03996 | 1 |
41DAP/39DAP | 1.04191 | 0.849 |
42DAP/41DAP | 1.02305 | 1 |
43DAP/42DAP | 1.01347 | 1 |
47DAP/43DAP | 0.98268 | 0.911 |
52DAP/47DAP | 0.92395 | 0.472 |
57DAP/52DAP | 0.92909 | 0.56 |
57DAP/7DAP | 0.89986 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16324 | 0.399 |
17DAP/reference | 1.0623 | 1 |
27DAP/reference | 1.01311 | 1 |
39DAP/reference | 0.93341 | 0.264 |
41DAP/reference | 0.96746 | 0.449 |
42DAP/reference | 0.90865 | 0.211 |
43DAP/reference | 1.25379 | 0.124 |
47DAP/reference | 0.89586 | 0.383 |
52DAP/reference | 1.11819 | 0.401 |
57DAP/reference | 1.19263 | 0.268 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91484 | 0.296 |
17DAP/reference | 0.90112 | 0.223 |
27DAP/reference | 0.88704 | 0.195 |
39DAP/reference | 0.87217 | 0.11 |
41DAP/reference | 0.98534 | 0.505 |
42DAP/reference | 1.05502 | 0.697 |
43DAP/reference | 0.85165 | 0.087 |
47DAP/reference | 1.01422 | 0.994 |
52DAP/reference | 0.90573 | 0.38 |
57DAP/reference | 0.81197 | 0.208 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15266 | 0.079 |
17DAP/reference | 0.99959 | 0.751 |
27DAP/reference | 1.29103 | 0.143 |
39DAP/reference | 1.19028 | 0.235 |
41DAP/reference | 1.0947 | 0.637 |
42DAP/reference | 0.77473 | 0.361 |
43DAP/reference | 1.35007 | 0.388 |
47DAP/reference | 0.91975 | 0.335 |
52DAP/reference | 1.00582 | 0.663 |
57DAP/reference | 1.08208 | 0.491 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90494 | 0.997 |
26DAP/20DAP | 1.23484 | 0.415 |
34DAP/26DAP | 1.07618 | 1 |
51DAP/34DAP | 0.79226 | 0.152 |
52DAP/51DAP | 0.90077 | 1 |
53DAP/52DAP | 0.82445 | 0.649 |
55DAP/53DAP | 0.91262 | 0.544 |
57DAP/55DAP | 1.18593 | 0.682 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.29335 | 0.455 |
68DAP/14DAP | 0.5967 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.27536 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 9.66683 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.924 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.98672 | 1 |
IL12-4/WTpooled | 0.87001 | 0.52 |
IL1-4/WTpooled | 1.11154 | 1 |
WT/WTpooled | 0.92059 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.28928 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93561 | 0.063 |
DC3000/delta hrp 6h | 1.11393 | 0.95 |
DC3000/delta hrp 12h | 1.27057 | 1 |
DC3000/delta hrp 24h | 1.21736 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.15617 | 0.693 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98568 | 1 |
Var 0h | 1.12361 | 1 |
Var 12h I row2-row1 | 0.90467 | 0.514 |
Var 12h NI row2-row1 | 1.10414 | 0.649 |
Var 36h I row2-row1 | 1.08833 | 1 |
Var 36h NI row2-row1 | 1.41214 | 1 |
Var 60h I row2-row1 | 0.973 | 0.952 |
Var 60h NI row2-row1 | 0.72879 | 0.302 |
Time course 0hI-0hNI | 0.91233 | 0.23 |
Time course 12hI-12hNI | 0.9988 | 1 |
Time course 36hI-36hNI | 0.9814 | 0.589 |
Time course 60hI-60hNI | 1.47115 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96943 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 1.34455 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.87964 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95316 | 0.263 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.26189 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.899 | 1 |
Manapal/WT (break) | 1.15664 | 1 |
Manapal/WT (red) | 1.11056 | 1 |
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