Expression of 1-1-4.1.6.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.965540.728
27DAP/17DAP1.190110.849
39DAP/27DAP1.141030.729
41DAP/39DAP0.983250.925
42DAP/41DAP1.113780.852
43DAP/42DAP0.965170.895
47DAP/43DAP1.026790.904
52DAP/47DAP1.005340.932
57DAP/52DAP1.079040.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.95590.362
17DAP/reference0.947460.474
27DAP/reference1.17060.128
39DAP/reference1.095090.504
41DAP/reference1.113390.338
42DAP/reference0.944640.242
43DAP/reference0.963460.576
47DAP/reference0.946720.322
52DAP/reference1.146580.43
57DAP/reference1.123850.037

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.01820.899
27DAP/17DAP0.903540.782
39DAP/27DAP0.968180.682
41DAP/39DAP1.084850.705
42DAP/41DAP1.046971
43DAP/42DAP1.849090.382
47DAP/43DAP0.944260.781
52DAP/47DAP0.962430.884
57DAP/52DAP0.830430.119
57DAP/7DAP1.30880.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.966080.495
17DAP/reference1.004920.599
27DAP/reference1.038661
39DAP/reference0.929650.354
41DAP/reference0.817250.116
42DAP/reference0.971410.482
43DAP/reference1.319390.256
47DAP/reference1.382550.214
52DAP/reference0.952360.398
57DAP/reference1.075890.356

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.703170.058
17DAP/reference1.335480.098
27DAP/reference1.268260.118
39DAP/reference1.318750.093
41DAP/reference0.962280.412
42DAP/reference1.245450.026
43DAP/reference1.187510.199
47DAP/reference1.060070.751
52DAP/reference1.3959
57DAP/reference1.036280.771

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.052660.804
17DAP/reference1.184790.365
27DAP/reference1.329020.043
39DAP/reference1.189890.711
41DAP/reference0.952690.618
42DAP/reference0.854560.445
43DAP/reference1.451330.418
47DAP/reference0.975350.574
52DAP/reference0.796360.132
57DAP/reference0.916770.242

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.222320.966
26DAP/20DAP0.976341
34DAP/26DAP1.05881
51DAP/34DAP1.014210.98
52DAP/51DAP0.963671
53DAP/52DAP0.871070.27
55DAP/53DAP1.582330.696
57DAP/55DAP0.355140.01
62DAP/57DAPN/AN/A
68DAP/62DAP5.033990.539
68DAP/14DAP14.59310.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.062061

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.625110.331
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.31889
Mature Eggplant/Ripe Tomato0.825121

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.93979
1-1-2/M820.88381
12-2/M820.91008
12-4/M821.000261
1-3/M820.80176
2-1-1/M821.04248
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.01383
4-3-2/M82N/AN/A
4-3/M821.01856
5-3/M821.093681
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.968661
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.125840.277
IL2-6/WTpooled0.765210.473
IL7-5/WTpooled1.09830.792
IL7-3/WTpooled0.901890.31
IL12-4/WTpooled0.899021
IL1-4/WTpooled1.048561
WT/WTpooled0.98611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.36131

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.946810.62
DC3000/delta hrp 6h0.957120.95
DC3000/delta hrp 12h1.014441
DC3000/delta hrp 24h1.532710.038

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.07495

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.989141
Exp 36h0.934450.943
Exp 60h0.816020.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.986991
Var 0h1.121840.421
Var 12h I row2-row10.66329
Var 12h NI row2-row10.64471
Var 36h I row2-row10.995811
Var 36h NI row2-row11.866691
Var 60h I row2-row11.29132
Var 60h NI row2-row11.450710.904
Time course 0hI-0hNI0.982760.988
Time course 12hI-12hNI1.042140.833
Time course 36hI-36hNI1.107670.799
Time course 60hI-60hNI0.739630.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.950190.722
transgenic ySAMdc/azygous control (breaker)1.600610.178
transgenic ySAMdc/azygous control (red)0.956611

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.993370.712

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.901740.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.562950.172
Manapal/WT (break)0.959481
Manapal/WT (red)0.816160.242