Expression of 1-1-4.1.6.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96554 | 0.728 |
27DAP/17DAP | 1.19011 | 0.849 |
39DAP/27DAP | 1.14103 | 0.729 |
41DAP/39DAP | 0.98325 | 0.925 |
42DAP/41DAP | 1.11378 | 0.852 |
43DAP/42DAP | 0.96517 | 0.895 |
47DAP/43DAP | 1.02679 | 0.904 |
52DAP/47DAP | 1.00534 | 0.932 |
57DAP/52DAP | 1.07904 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9559 | 0.362 |
17DAP/reference | 0.94746 | 0.474 |
27DAP/reference | 1.1706 | 0.128 |
39DAP/reference | 1.09509 | 0.504 |
41DAP/reference | 1.11339 | 0.338 |
42DAP/reference | 0.94464 | 0.242 |
43DAP/reference | 0.96346 | 0.576 |
47DAP/reference | 0.94672 | 0.322 |
52DAP/reference | 1.14658 | 0.43 |
57DAP/reference | 1.12385 | 0.037 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0182 | 0.899 |
27DAP/17DAP | 0.90354 | 0.782 |
39DAP/27DAP | 0.96818 | 0.682 |
41DAP/39DAP | 1.08485 | 0.705 |
42DAP/41DAP | 1.04697 | 1 |
43DAP/42DAP | 1.84909 | 0.382 |
47DAP/43DAP | 0.94426 | 0.781 |
52DAP/47DAP | 0.96243 | 0.884 |
57DAP/52DAP | 0.83043 | 0.119 |
57DAP/7DAP | 1.3088 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96608 | 0.495 |
17DAP/reference | 1.00492 | 0.599 |
27DAP/reference | 1.03866 | 1 |
39DAP/reference | 0.92965 | 0.354 |
41DAP/reference | 0.81725 | 0.116 |
42DAP/reference | 0.97141 | 0.482 |
43DAP/reference | 1.31939 | 0.256 |
47DAP/reference | 1.38255 | 0.214 |
52DAP/reference | 0.95236 | 0.398 |
57DAP/reference | 1.07589 | 0.356 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70317 | 0.058 |
17DAP/reference | 1.33548 | 0.098 |
27DAP/reference | 1.26826 | 0.118 |
39DAP/reference | 1.31875 | 0.093 |
41DAP/reference | 0.96228 | 0.412 |
42DAP/reference | 1.24545 | 0.026 |
43DAP/reference | 1.18751 | 0.199 |
47DAP/reference | 1.06007 | 0.751 |
52DAP/reference | 1.3959 | |
57DAP/reference | 1.03628 | 0.771 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05266 | 0.804 |
17DAP/reference | 1.18479 | 0.365 |
27DAP/reference | 1.32902 | 0.043 |
39DAP/reference | 1.18989 | 0.711 |
41DAP/reference | 0.95269 | 0.618 |
42DAP/reference | 0.85456 | 0.445 |
43DAP/reference | 1.45133 | 0.418 |
47DAP/reference | 0.97535 | 0.574 |
52DAP/reference | 0.79636 | 0.132 |
57DAP/reference | 0.91677 | 0.242 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.22232 | 0.966 |
26DAP/20DAP | 0.97634 | 1 |
34DAP/26DAP | 1.0588 | 1 |
51DAP/34DAP | 1.01421 | 0.98 |
52DAP/51DAP | 0.96367 | 1 |
53DAP/52DAP | 0.87107 | 0.27 |
55DAP/53DAP | 1.58233 | 0.696 |
57DAP/55DAP | 0.35514 | 0.01 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 5.03399 | 0.539 |
68DAP/14DAP | 14.5931 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.06206 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.62511 | 0.331 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.31889 | |
Mature Eggplant/Ripe Tomato | 0.82512 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93979 | |
1-1-2/M82 | 0.88381 | |
12-2/M82 | 0.91008 | |
12-4/M82 | 1.00026 | 1 |
1-3/M82 | 0.80176 | |
2-1-1/M82 | 1.04248 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.01383 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.01856 | |
5-3/M82 | 1.09368 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.96866 | 1 |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12584 | 0.277 |
IL2-6/WTpooled | 0.76521 | 0.473 |
IL7-5/WTpooled | 1.0983 | 0.792 |
IL7-3/WTpooled | 0.90189 | 0.31 |
IL12-4/WTpooled | 0.89902 | 1 |
IL1-4/WTpooled | 1.04856 | 1 |
WT/WTpooled | 0.9861 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.36131 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94681 | 0.62 |
DC3000/delta hrp 6h | 0.95712 | 0.95 |
DC3000/delta hrp 12h | 1.01444 | 1 |
DC3000/delta hrp 24h | 1.53271 | 0.038 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.07495 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98914 | 1 |
Exp 36h | 0.93445 | 0.943 |
Exp 60h | 0.81602 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98699 | 1 |
Var 0h | 1.12184 | 0.421 |
Var 12h I row2-row1 | 0.66329 | |
Var 12h NI row2-row1 | 0.64471 | |
Var 36h I row2-row1 | 0.99581 | 1 |
Var 36h NI row2-row1 | 1.86669 | 1 |
Var 60h I row2-row1 | 1.29132 | |
Var 60h NI row2-row1 | 1.45071 | 0.904 |
Time course 0hI-0hNI | 0.98276 | 0.988 |
Time course 12hI-12hNI | 1.04214 | 0.833 |
Time course 36hI-36hNI | 1.10767 | 0.799 |
Time course 60hI-60hNI | 0.73963 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95019 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.60061 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.95661 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99337 | 0.712 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.90174 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.56295 | 0.172 |
Manapal/WT (break) | 0.95948 | 1 |
Manapal/WT (red) | 0.81616 | 0.242 |
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