Expression of 1-1-4.1.6.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.937 | 0.64 |
27DAP/17DAP | 1.64311 | 0.435 |
39DAP/27DAP | 0.90706 | 0.631 |
41DAP/39DAP | 0.87675 | 0.602 |
42DAP/41DAP | 1.09333 | 0.938 |
43DAP/42DAP | 0.78825 | 0.495 |
47DAP/43DAP | 1.13648 | 0.715 |
52DAP/47DAP | 1.00953 | 0.971 |
57DAP/52DAP | 1.07337 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01466 | 1 |
17DAP/reference | 1.07669 | 0.528 |
27DAP/reference | 1.45903 | 0.012 |
39DAP/reference | 1.19141 | 0.343 |
41DAP/reference | 1.28711 | 0.014 |
42DAP/reference | 1.05995 | 0.585 |
43DAP/reference | 1.16497 | 0.035 |
47DAP/reference | 1.04809 | 0.728 |
52DAP/reference | 1.78353 | 0.016 |
57DAP/reference | 2.0791 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03303 | 0.87 |
27DAP/17DAP | 1.10088 | 0.735 |
39DAP/27DAP | 1.06215 | 0.685 |
41DAP/39DAP | 0.98658 | 1 |
42DAP/41DAP | 1.23212 | 0.04 |
43DAP/42DAP | 0.79548 | 0.036 |
47DAP/43DAP | 0.98586 | 0.93 |
52DAP/47DAP | 1.44507 | 0.308 |
57DAP/52DAP | 1.34166 | 0.07 |
57DAP/7DAP | 1.62515 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0481 | 0.961 |
17DAP/reference | 1.00333 | 0.599 |
27DAP/reference | 0.96141 | 0.43 |
39DAP/reference | 1.05581 | 0.601 |
41DAP/reference | 0.89947 | 0.247 |
42DAP/reference | 0.9969 | 0.641 |
43DAP/reference | 0.80287 | 0.028 |
47DAP/reference | 1.00069 | 1 |
52DAP/reference | 1.11976 | 0.328 |
57DAP/reference | 1.08056 | 0.25 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93763 | 0.457 |
17DAP/reference | 1.23363 | 0.052 |
27DAP/reference | 1.11784 | 0.412 |
39DAP/reference | 1.13706 | 0.514 |
41DAP/reference | 0.89591 | 0.1 |
42DAP/reference | 0.88594 | 0.121 |
43DAP/reference | 1.06395 | 0.745 |
47DAP/reference | 1.01387 | 0.812 |
52DAP/reference | 0.9924 | 0.619 |
57DAP/reference | 0.8981 | 0.408 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28046 | 0.207 |
17DAP/reference | 1.07797 | 0.558 |
27DAP/reference | 1.15933 | 0.137 |
39DAP/reference | 0.98859 | 0.693 |
41DAP/reference | 1.07302 | 0.961 |
42DAP/reference | 1.26661 | 0.199 |
43DAP/reference | 1.14738 | 0.355 |
47DAP/reference | 1.00388 | 0.708 |
52DAP/reference | 1.21316 | 0.228 |
57DAP/reference | 1.73299 | 0.012 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01624 | 1 |
26DAP/20DAP | 1.29989 | 0.518 |
34DAP/26DAP | 0.86519 | 0.606 |
51DAP/34DAP | 1.09215 | 0.909 |
52DAP/51DAP | 0.96757 | 1 |
53DAP/52DAP | 1.38195 | 0.129 |
55DAP/53DAP | 0.82616 | 0.293 |
57DAP/55DAP | 0.93704 | 0.736 |
62DAP/57DAP | 1.15947 | |
68DAP/62DAP | 1.07752 | 0.869 |
68DAP/14DAP | 0.91944 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.78914 | 0.062 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.75888 | |
Mature Green Tomato/Ripe Tomato | 0.9286 | 0.522 |
Immature Eggplant/Mature Eggplant | 1.61244 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.28462 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.13124 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.67394 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.90729 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98139 | |
3-2/M82 | 0.89788 | 0.752 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.78911 | |
4-3-2/M82 | 0.87767 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.01027 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.3955 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.92949 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.06876 | 0.493 |
IL2-6/WTpooled | 1.11686 | 0.788 |
IL7-5/WTpooled | 0.86424 | 1 |
IL7-3/WTpooled | 1.09031 | 1 |
IL12-4/WTpooled | 0.83484 | 0.566 |
IL1-4/WTpooled | 1.13464 | 1 |
WT/WTpooled | 0.78517 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05055 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94788 | 1 |
DC3000/delta hrp 6h | 0.88268 | 0.95 |
DC3000/delta hrp 12h | 0.89866 | 1 |
DC3000/delta hrp 24h | 0.85617 | 0.371 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.85691 | 0.46 |
DC3000 delta B/DC3000 delta AB | 0.75248 | 0.037 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99878 | 1 |
Exp 36h | 1.26302 | 1 |
Exp 60h | 1.09477 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02406 | 1 |
Var 0h | 0.97017 | 1 |
Var 12h I row2-row1 | 1.09421 | 0.58 |
Var 12h NI row2-row1 | 1.10216 | 0.235 |
Var 36h I row2-row1 | 0.7721 | 0.805 |
Var 36h NI row2-row1 | 1.11286 | 1 |
Var 60h I row2-row1 | 0.91802 | 0.374 |
Var 60h NI row2-row1 | 1.0027 | 1 |
Time course 0hI-0hNI | 0.95639 | 0.617 |
Time course 12hI-12hNI | 1.02014 | 0.803 |
Time course 36hI-36hNI | 0.93774 | 0.206 |
Time course 60hI-60hNI | 0.5166 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10523 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 1.03788 | 1 |
transgenic ySAMdc/azygous control (red) | 1.06308 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.85 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.734 | 1 |
Manapal/WT (break) | 0.88606 | 1 |
Manapal/WT (red) | 1.32932 | 0.413 |
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