Expression of 1-1-4.1.6.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.9370.64
27DAP/17DAP1.643110.435
39DAP/27DAP0.907060.631
41DAP/39DAP0.876750.602
42DAP/41DAP1.093330.938
43DAP/42DAP0.788250.495
47DAP/43DAP1.136480.715
52DAP/47DAP1.009530.971
57DAP/52DAP1.073370.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.014661
17DAP/reference1.076690.528
27DAP/reference1.459030.012
39DAP/reference1.191410.343
41DAP/reference1.287110.014
42DAP/reference1.059950.585
43DAP/reference1.164970.035
47DAP/reference1.048090.728
52DAP/reference1.783530.016
57DAP/reference2.07910.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.033030.87
27DAP/17DAP1.100880.735
39DAP/27DAP1.062150.685
41DAP/39DAP0.986581
42DAP/41DAP1.232120.04
43DAP/42DAP0.795480.036
47DAP/43DAP0.985860.93
52DAP/47DAP1.445070.308
57DAP/52DAP1.341660.07
57DAP/7DAP1.625151

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.04810.961
17DAP/reference1.003330.599
27DAP/reference0.961410.43
39DAP/reference1.055810.601
41DAP/reference0.899470.247
42DAP/reference0.99690.641
43DAP/reference0.802870.028
47DAP/reference1.000691
52DAP/reference1.119760.328
57DAP/reference1.080560.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937630.457
17DAP/reference1.233630.052
27DAP/reference1.117840.412
39DAP/reference1.137060.514
41DAP/reference0.895910.1
42DAP/reference0.885940.121
43DAP/reference1.063950.745
47DAP/reference1.013870.812
52DAP/reference0.99240.619
57DAP/reference0.89810.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.280460.207
17DAP/reference1.077970.558
27DAP/reference1.159330.137
39DAP/reference0.988590.693
41DAP/reference1.073020.961
42DAP/reference1.266610.199
43DAP/reference1.147380.355
47DAP/reference1.003880.708
52DAP/reference1.213160.228
57DAP/reference1.732990.012

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.016241
26DAP/20DAP1.299890.518
34DAP/26DAP0.865190.606
51DAP/34DAP1.092150.909
52DAP/51DAP0.967571
53DAP/52DAP1.381950.129
55DAP/53DAP0.826160.293
57DAP/55DAP0.937040.736
62DAP/57DAP1.15947
68DAP/62DAP1.077520.869
68DAP/14DAP0.919441

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.789140.062

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.75888
Mature Green Tomato/Ripe Tomato0.92860.522
Immature Eggplant/Mature Eggplant1.612440.05
Ripe Pepper/Ripe Tomato0.284620.224
Mature Eggplant/Ripe Tomato1.131241

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.67394
12-2/M82N/AN/A
12-4/M820.907291
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.98139
3-2/M820.897880.752
4-1-1/M82N/AN/A
4-1/M820.78911
4-3-2/M820.87767
4-3/M82N/AN/A
5-3/M821.010271
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.3955
7-2/M82N/AN/A
9-3-2/M820.929490.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.068760.493
IL2-6/WTpooled1.116860.788
IL7-5/WTpooled0.864241
IL7-3/WTpooled1.090311
IL12-4/WTpooled0.834840.566
IL1-4/WTpooled1.134641
WT/WTpooled0.785171

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.050550.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.947881
DC3000/delta hrp 6h0.882680.95
DC3000/delta hrp 12h0.898661
DC3000/delta hrp 24h0.856170.371

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.856910.46
DC3000 delta B/DC3000 delta AB0.752480.037

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.998781
Exp 36h1.263021
Exp 60h1.094771

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.024061
Var 0h0.970171
Var 12h I row2-row11.094210.58
Var 12h NI row2-row11.102160.235
Var 36h I row2-row10.77210.805
Var 36h NI row2-row11.112861
Var 60h I row2-row10.918020.374
Var 60h NI row2-row11.00271
Time course 0hI-0hNI0.956390.617
Time course 12hI-12hNI1.020140.803
Time course 36hI-36hNI0.937740.206
Time course 60hI-60hNI0.51660.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.105230.305
transgenic ySAMdc/azygous control (breaker)1.037881
transgenic ySAMdc/azygous control (red)1.063080.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.850.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.7341
Manapal/WT (break)0.886061
Manapal/WT (red)1.329320.413