Expression of 1-1-4.1.6.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.070650.977
27DAP/17DAP0.83170.542
39DAP/27DAP1.362180.405
41DAP/39DAP0.881190.571
42DAP/41DAP1.887280.026
43DAP/42DAP3.452310.021
47DAP/43DAP1.82920.201
52DAP/47DAP0.631640.171
57DAP/52DAP0.636120.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.909950.308
17DAP/reference1.105860.318
27DAP/reference1.12830.394
39DAP/reference1.065570.27
41DAP/reference1.187540.221
42DAP/reference1.059270.119
43DAP/reference1.151980.163
47DAP/reference1.058671
52DAP/reference0.939810.36
57DAP/reference0.986020.639

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.974750.663
27DAP/17DAP1.067070.836
39DAP/27DAP1.107220.27
41DAP/39DAP1.026530.896
42DAP/41DAP1.004880.926
43DAP/42DAP1.069330.056
47DAP/43DAP0.979040.902
52DAP/47DAP1.040270.831
57DAP/52DAP0.944880.528
57DAP/7DAP1.082481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.911820.296
17DAP/reference1.155580.134
27DAP/reference1.019171
39DAP/reference0.912220.17
41DAP/reference0.952950.412
42DAP/reference1.070970.686
43DAP/reference1.22680.212
47DAP/reference1.022851
52DAP/reference0.985410.523
57DAP/reference1.011771

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.070530.484
17DAP/reference1.138060.285
27DAP/reference0.968370.483
39DAP/reference0.840680.065
41DAP/reference1.020731
42DAP/reference0.880840.019
43DAP/reference1.126890.986
47DAP/reference0.948950.368
52DAP/reference1.047490.789
57DAP/reference0.953420.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.11380.218
17DAP/reference1.093120.14
27DAP/reference1.067510.777
39DAP/reference0.826480.199
41DAP/reference1.043670.939
42DAP/reference0.989470.816
43DAP/reference0.98050.66
47DAP/reference1.21204
52DAP/reference0.686320.076
57DAP/reference0.960560.283

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.978681
26DAP/20DAP0.828730.244
34DAP/26DAP0.987551
51DAP/34DAP0.895270.508
52DAP/51DAP0.952821
53DAP/52DAP1.145490.166
55DAP/53DAP0.996690.917
57DAP/55DAP0.736570.225
62DAP/57DAP1.87887
68DAP/62DAP6.174970.091
68DAP/14DAP9.671160.025

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.956540.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.705750.189
Mature Green Tomato/Ripe Tomato0.174110.019
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato4.34055
Mature Eggplant/Ripe Tomato1.000551

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.03259
1-1-2/M822.305061
12-2/M82N/AN/A
12-4/M820.991481
1-3/M821.12914
2-1-1/M820.74157
2-1/M82N/AN/A
2-6/M820.76637
3-2/M820.27472
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.097021
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.66826
7-2/M821.03497
9-3-2/M821.628940.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.735170.243
IL2-6/WTpooled1.103660.659
IL7-5/WTpooled1.0141
IL7-3/WTpooled0.790910.294
IL12-4/WTpooled0.945780.581
IL1-4/WTpooled0.947550.834
WT/WTpooled1.004641

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.094830.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.045650.921
DC3000/delta hrp 6h2.414460.18
DC3000/delta hrp 12h1.102281
DC3000/delta hrp 24h1.056980.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.485930.094
DC3000 delta B/DC3000 delta AB1.019941

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.595971
Exp 36h1.252931
Exp 60h1.057350.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.994911
Var 0h1.207620.936
Var 12h I row2-row11.243290.211
Var 12h NI row2-row10.961060.906
Var 36h I row2-row10.899820.575
Var 36h NI row2-row10.991450.852
Var 60h I row2-row11.264441
Var 60h NI row2-row11.541030.904
Time course 0hI-0hNI1.067570.719
Time course 12hI-12hNI1.04390.73
Time course 36hI-36hNI1.006341
Time course 60hI-60hNI1.201550.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.135140.305
transgenic ySAMdc/azygous control (breaker)1.018681
transgenic ySAMdc/azygous control (red)0.936861

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.98680.534

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.855780.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.422520.105
Manapal/WT (break)1.369880.381
Manapal/WT (red)1.551790.142