Expression of 1-1-4.1.6.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07065 | 0.977 |
27DAP/17DAP | 0.8317 | 0.542 |
39DAP/27DAP | 1.36218 | 0.405 |
41DAP/39DAP | 0.88119 | 0.571 |
42DAP/41DAP | 1.88728 | 0.026 |
43DAP/42DAP | 3.45231 | 0.021 |
47DAP/43DAP | 1.8292 | 0.201 |
52DAP/47DAP | 0.63164 | 0.171 |
57DAP/52DAP | 0.63612 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90995 | 0.308 |
17DAP/reference | 1.10586 | 0.318 |
27DAP/reference | 1.1283 | 0.394 |
39DAP/reference | 1.06557 | 0.27 |
41DAP/reference | 1.18754 | 0.221 |
42DAP/reference | 1.05927 | 0.119 |
43DAP/reference | 1.15198 | 0.163 |
47DAP/reference | 1.05867 | 1 |
52DAP/reference | 0.93981 | 0.36 |
57DAP/reference | 0.98602 | 0.639 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97475 | 0.663 |
27DAP/17DAP | 1.06707 | 0.836 |
39DAP/27DAP | 1.10722 | 0.27 |
41DAP/39DAP | 1.02653 | 0.896 |
42DAP/41DAP | 1.00488 | 0.926 |
43DAP/42DAP | 1.06933 | 0.056 |
47DAP/43DAP | 0.97904 | 0.902 |
52DAP/47DAP | 1.04027 | 0.831 |
57DAP/52DAP | 0.94488 | 0.528 |
57DAP/7DAP | 1.08248 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91182 | 0.296 |
17DAP/reference | 1.15558 | 0.134 |
27DAP/reference | 1.01917 | 1 |
39DAP/reference | 0.91222 | 0.17 |
41DAP/reference | 0.95295 | 0.412 |
42DAP/reference | 1.07097 | 0.686 |
43DAP/reference | 1.2268 | 0.212 |
47DAP/reference | 1.02285 | 1 |
52DAP/reference | 0.98541 | 0.523 |
57DAP/reference | 1.01177 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07053 | 0.484 |
17DAP/reference | 1.13806 | 0.285 |
27DAP/reference | 0.96837 | 0.483 |
39DAP/reference | 0.84068 | 0.065 |
41DAP/reference | 1.02073 | 1 |
42DAP/reference | 0.88084 | 0.019 |
43DAP/reference | 1.12689 | 0.986 |
47DAP/reference | 0.94895 | 0.368 |
52DAP/reference | 1.04749 | 0.789 |
57DAP/reference | 0.95342 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1138 | 0.218 |
17DAP/reference | 1.09312 | 0.14 |
27DAP/reference | 1.06751 | 0.777 |
39DAP/reference | 0.82648 | 0.199 |
41DAP/reference | 1.04367 | 0.939 |
42DAP/reference | 0.98947 | 0.816 |
43DAP/reference | 0.9805 | 0.66 |
47DAP/reference | 1.21204 | |
52DAP/reference | 0.68632 | 0.076 |
57DAP/reference | 0.96056 | 0.283 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97868 | 1 |
26DAP/20DAP | 0.82873 | 0.244 |
34DAP/26DAP | 0.98755 | 1 |
51DAP/34DAP | 0.89527 | 0.508 |
52DAP/51DAP | 0.95282 | 1 |
53DAP/52DAP | 1.14549 | 0.166 |
55DAP/53DAP | 0.99669 | 0.917 |
57DAP/55DAP | 0.73657 | 0.225 |
62DAP/57DAP | 1.87887 | |
68DAP/62DAP | 6.17497 | 0.091 |
68DAP/14DAP | 9.67116 | 0.025 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95654 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.70575 | 0.189 |
Mature Green Tomato/Ripe Tomato | 0.17411 | 0.019 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 4.34055 | |
Mature Eggplant/Ripe Tomato | 1.00055 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.03259 | |
1-1-2/M82 | 2.30506 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.99148 | 1 |
1-3/M82 | 1.12914 | |
2-1-1/M82 | 0.74157 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.76637 | |
3-2/M82 | 0.27472 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.09702 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.66826 | |
7-2/M82 | 1.03497 | |
9-3-2/M82 | 1.62894 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.73517 | 0.243 |
IL2-6/WTpooled | 1.10366 | 0.659 |
IL7-5/WTpooled | 1.014 | 1 |
IL7-3/WTpooled | 0.79091 | 0.294 |
IL12-4/WTpooled | 0.94578 | 0.581 |
IL1-4/WTpooled | 0.94755 | 0.834 |
WT/WTpooled | 1.00464 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09483 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04565 | 0.921 |
DC3000/delta hrp 6h | 2.41446 | 0.18 |
DC3000/delta hrp 12h | 1.10228 | 1 |
DC3000/delta hrp 24h | 1.05698 | 0.567 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.48593 | 0.094 |
DC3000 delta B/DC3000 delta AB | 1.01994 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.59597 | 1 |
Exp 36h | 1.25293 | 1 |
Exp 60h | 1.05735 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99491 | 1 |
Var 0h | 1.20762 | 0.936 |
Var 12h I row2-row1 | 1.24329 | 0.211 |
Var 12h NI row2-row1 | 0.96106 | 0.906 |
Var 36h I row2-row1 | 0.89982 | 0.575 |
Var 36h NI row2-row1 | 0.99145 | 0.852 |
Var 60h I row2-row1 | 1.26444 | 1 |
Var 60h NI row2-row1 | 1.54103 | 0.904 |
Time course 0hI-0hNI | 1.06757 | 0.719 |
Time course 12hI-12hNI | 1.0439 | 0.73 |
Time course 36hI-36hNI | 1.00634 | 1 |
Time course 60hI-60hNI | 1.20155 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13514 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 1.01868 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93686 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9868 | 0.534 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.85578 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.42252 | 0.105 |
Manapal/WT (break) | 1.36988 | 0.381 |
Manapal/WT (red) | 1.55179 | 0.142 |
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