Expression of 1-1-4.1.7.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.957230.689
27DAP/17DAP0.97910.994
39DAP/27DAP1.616280.329
41DAP/39DAP0.831780.401
42DAP/41DAP1.116560.899
43DAP/42DAP0.851730.495
47DAP/43DAP0.986220.821
52DAP/47DAP1.309860.516
57DAP/52DAP0.98950.982

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.157260.147
17DAP/reference0.957710.503
27DAP/reference0.974910.538
39DAP/reference1.02090.842
41DAP/reference1.07340.552
42DAP/reference1.309960.001
43DAP/reference1.04060.838
47DAP/reference1.15220.014
52DAP/reference1.192370.186
57DAP/reference1.188930.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.047370.65
27DAP/17DAP0.986530.919
39DAP/27DAP0.901490.134
41DAP/39DAP0.984890.997
42DAP/41DAP1.054150.582
43DAP/42DAP0.904540.127
47DAP/43DAP1.033170.914
52DAP/47DAP1.009191
57DAP/52DAP0.905450.379
57DAP/7DAP0.922521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.998631
17DAP/reference1.004031
27DAP/reference1.026540.974
39DAP/reference1.137070.069
41DAP/reference1.118340.177
42DAP/reference1.031110.686
43DAP/reference0.939470.192
47DAP/reference1.141820.468
52DAP/reference1.134060.121
57DAP/reference1.150980.024

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.961620.607
17DAP/reference1.234050.136
27DAP/reference1.500060.065
39DAP/reference1.445950.047
41DAP/reference1.358160.084
42DAP/reference1.293480.062
43DAP/reference1.199220.424
47DAP/reference1.203070.079
52DAP/reference1.100840.016
57DAP/reference0.983070.649

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937530.092
17DAP/reference1.131040.638
27DAP/reference1.008281
39DAP/reference0.994550.693
41DAP/reference0.997120.826
42DAP/reference1.531690.265
43DAP/reference1.453620.154
47DAP/reference1.09430.355
52DAP/reference0.836770.228
57DAP/reference1.904330.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.950231
26DAP/20DAP1.024961
34DAP/26DAP0.938280.816
51DAP/34DAP1.006511
52DAP/51DAP1.000331
53DAP/52DAP1.073120.37
55DAP/53DAP1.041580.834
57DAP/55DAP1.012970.97
62DAP/57DAP1.084670.8
68DAP/62DAP1.183820.95
68DAP/14DAP1.499550.028

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.494980.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.681960.237
Immature Eggplant/Mature Eggplant1.059310.528
Ripe Pepper/Ripe Tomato0.100830.224
Mature Eggplant/Ripe Tomato0.889261

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.959470.944
1-1-2/M821.11661
12-2/M820.927320.955
12-4/M821.043141
1-3/M821.173981
2-1-1/M821.095
2-1/M820.891421
2-6/M820.948511
3-2/M820.943911
4-1-1/M821.083441
4-1/M821.00125
4-3-2/M821.132360.508
4-3/M821.228720.268
5-3/M820.999831
6-2/M821.07114
6-3/M820.988191
7-1/M821.050151
7-2/M821.051261
9-3-2/M821.133091

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.370030.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.002421
DC3000/delta hrp 6h1.066811
DC3000/delta hrp 12h1.04351
DC3000/delta hrp 24h1.055580.71

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.118960.183
DC3000 delta B/DC3000 delta AB1.032030.665

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.005081
Var 0h0.845351
Var 12h I row2-row11.083260.443
Var 12h NI row2-row11.142911
Var 36h I row2-row11.087281
Var 36h NI row2-row10.897970.645
Var 60h I row2-row11.15551
Var 60h NI row2-row10.967491
Time course 0hI-0hNI1.030371
Time course 12hI-12hNI1.058410.756
Time course 36hI-36hNI0.909140.246
Time course 60hI-60hNI1.176970.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.986390.789
transgenic ySAMdc/azygous control (breaker)1.225750.248
transgenic ySAMdc/azygous control (red)1.054580.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.051730.063

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.936690.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.733820.172
Manapal/WT (break)0.907831
Manapal/WT (red)1.465120.222