Expression of 1-1-4.1.7.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95723 | 0.689 |
27DAP/17DAP | 0.9791 | 0.994 |
39DAP/27DAP | 1.61628 | 0.329 |
41DAP/39DAP | 0.83178 | 0.401 |
42DAP/41DAP | 1.11656 | 0.899 |
43DAP/42DAP | 0.85173 | 0.495 |
47DAP/43DAP | 0.98622 | 0.821 |
52DAP/47DAP | 1.30986 | 0.516 |
57DAP/52DAP | 0.9895 | 0.982 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15726 | 0.147 |
17DAP/reference | 0.95771 | 0.503 |
27DAP/reference | 0.97491 | 0.538 |
39DAP/reference | 1.0209 | 0.842 |
41DAP/reference | 1.0734 | 0.552 |
42DAP/reference | 1.30996 | 0.001 |
43DAP/reference | 1.0406 | 0.838 |
47DAP/reference | 1.1522 | 0.014 |
52DAP/reference | 1.19237 | 0.186 |
57DAP/reference | 1.18893 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04737 | 0.65 |
27DAP/17DAP | 0.98653 | 0.919 |
39DAP/27DAP | 0.90149 | 0.134 |
41DAP/39DAP | 0.98489 | 0.997 |
42DAP/41DAP | 1.05415 | 0.582 |
43DAP/42DAP | 0.90454 | 0.127 |
47DAP/43DAP | 1.03317 | 0.914 |
52DAP/47DAP | 1.00919 | 1 |
57DAP/52DAP | 0.90545 | 0.379 |
57DAP/7DAP | 0.92252 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99863 | 1 |
17DAP/reference | 1.00403 | 1 |
27DAP/reference | 1.02654 | 0.974 |
39DAP/reference | 1.13707 | 0.069 |
41DAP/reference | 1.11834 | 0.177 |
42DAP/reference | 1.03111 | 0.686 |
43DAP/reference | 0.93947 | 0.192 |
47DAP/reference | 1.14182 | 0.468 |
52DAP/reference | 1.13406 | 0.121 |
57DAP/reference | 1.15098 | 0.024 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96162 | 0.607 |
17DAP/reference | 1.23405 | 0.136 |
27DAP/reference | 1.50006 | 0.065 |
39DAP/reference | 1.44595 | 0.047 |
41DAP/reference | 1.35816 | 0.084 |
42DAP/reference | 1.29348 | 0.062 |
43DAP/reference | 1.19922 | 0.424 |
47DAP/reference | 1.20307 | 0.079 |
52DAP/reference | 1.10084 | 0.016 |
57DAP/reference | 0.98307 | 0.649 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93753 | 0.092 |
17DAP/reference | 1.13104 | 0.638 |
27DAP/reference | 1.00828 | 1 |
39DAP/reference | 0.99455 | 0.693 |
41DAP/reference | 0.99712 | 0.826 |
42DAP/reference | 1.53169 | 0.265 |
43DAP/reference | 1.45362 | 0.154 |
47DAP/reference | 1.0943 | 0.355 |
52DAP/reference | 0.83677 | 0.228 |
57DAP/reference | 1.90433 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95023 | 1 |
26DAP/20DAP | 1.02496 | 1 |
34DAP/26DAP | 0.93828 | 0.816 |
51DAP/34DAP | 1.00651 | 1 |
52DAP/51DAP | 1.00033 | 1 |
53DAP/52DAP | 1.07312 | 0.37 |
55DAP/53DAP | 1.04158 | 0.834 |
57DAP/55DAP | 1.01297 | 0.97 |
62DAP/57DAP | 1.08467 | 0.8 |
68DAP/62DAP | 1.18382 | 0.95 |
68DAP/14DAP | 1.49955 | 0.028 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.49498 | 0.023 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.68196 | 0.237 |
Immature Eggplant/Mature Eggplant | 1.05931 | 0.528 |
Ripe Pepper/Ripe Tomato | 0.10083 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.88926 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95947 | 0.944 |
1-1-2/M82 | 1.1166 | 1 |
12-2/M82 | 0.92732 | 0.955 |
12-4/M82 | 1.04314 | 1 |
1-3/M82 | 1.17398 | 1 |
2-1-1/M82 | 1.095 | |
2-1/M82 | 0.89142 | 1 |
2-6/M82 | 0.94851 | 1 |
3-2/M82 | 0.94391 | 1 |
4-1-1/M82 | 1.08344 | 1 |
4-1/M82 | 1.00125 | |
4-3-2/M82 | 1.13236 | 0.508 |
4-3/M82 | 1.22872 | 0.268 |
5-3/M82 | 0.99983 | 1 |
6-2/M82 | 1.07114 | |
6-3/M82 | 0.98819 | 1 |
7-1/M82 | 1.05015 | 1 |
7-2/M82 | 1.05126 | 1 |
9-3-2/M82 | 1.13309 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.37003 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00242 | 1 |
DC3000/delta hrp 6h | 1.06681 | 1 |
DC3000/delta hrp 12h | 1.0435 | 1 |
DC3000/delta hrp 24h | 1.05558 | 0.71 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11896 | 0.183 |
DC3000 delta B/DC3000 delta AB | 1.03203 | 0.665 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00508 | 1 |
Var 0h | 0.84535 | 1 |
Var 12h I row2-row1 | 1.08326 | 0.443 |
Var 12h NI row2-row1 | 1.14291 | 1 |
Var 36h I row2-row1 | 1.08728 | 1 |
Var 36h NI row2-row1 | 0.89797 | 0.645 |
Var 60h I row2-row1 | 1.1555 | 1 |
Var 60h NI row2-row1 | 0.96749 | 1 |
Time course 0hI-0hNI | 1.03037 | 1 |
Time course 12hI-12hNI | 1.05841 | 0.756 |
Time course 36hI-36hNI | 0.90914 | 0.246 |
Time course 60hI-60hNI | 1.17697 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98639 | 0.789 |
transgenic ySAMdc/azygous control (breaker) | 1.22575 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.05458 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05173 | 0.063 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93669 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73382 | 0.172 |
Manapal/WT (break) | 0.90783 | 1 |
Manapal/WT (red) | 1.46512 | 0.222 |
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