Expression of 1-1-4.1.7.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10429 | 0.656 |
27DAP/17DAP | 1.28395 | 0.735 |
39DAP/27DAP | 0.9865 | 0.798 |
41DAP/39DAP | 1.04606 | 0.657 |
42DAP/41DAP | 1.09398 | 0.873 |
43DAP/42DAP | 1.02857 | 1 |
47DAP/43DAP | 0.96739 | 0.859 |
52DAP/47DAP | 0.80424 | 0.503 |
57DAP/52DAP | 1.11943 | 0.859 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13215 | 0.218 |
17DAP/reference | 1.14744 | 0.148 |
27DAP/reference | 1.0428 | 0.548 |
39DAP/reference | 1.13855 | 0.079 |
41DAP/reference | 1.10846 | 0.054 |
42DAP/reference | 0.9027 | 0.056 |
43DAP/reference | 0.98002 | 0.708 |
47DAP/reference | 0.98165 | 0.445 |
52DAP/reference | 0.9107 | 0.131 |
57DAP/reference | 0.90817 | 0.131 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85487 | 0.164 |
27DAP/17DAP | 0.96252 | 0.878 |
39DAP/27DAP | 1.12657 | 0.519 |
41DAP/39DAP | 0.91915 | 0.793 |
42DAP/41DAP | 0.8605 | 0.276 |
43DAP/42DAP | 1.17081 | 0.297 |
47DAP/43DAP | 1.0566 | 0.884 |
52DAP/47DAP | 1.01767 | 0.956 |
57DAP/52DAP | 0.93948 | 0.577 |
57DAP/7DAP | 1.45447 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02717 | 0.961 |
17DAP/reference | 1.09986 | 1 |
27DAP/reference | 1.01131 | 0.748 |
39DAP/reference | 1.05713 | 0.909 |
41DAP/reference | 1.36409 | 0.077 |
42DAP/reference | 1.02546 | 0.686 |
43DAP/reference | 1.06178 | 0.788 |
47DAP/reference | 0.94759 | 0.671 |
52DAP/reference | 0.93374 | 0.363 |
57DAP/reference | 1.0215 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17241 | 0.47 |
17DAP/reference | 1.15263 | 0.471 |
27DAP/reference | 0.97579 | 0.519 |
39DAP/reference | 0.80065 | 0.069 |
41DAP/reference | 0.90067 | 0.124 |
42DAP/reference | 0.91281 | 0.261 |
43DAP/reference | 1.1032 | 0.435 |
47DAP/reference | 0.98665 | 0.625 |
52DAP/reference | 1.0929 | 0.208 |
57DAP/reference | 1.08675 | 0.868 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12213 | 0.338 |
17DAP/reference | 0.96841 | 0.647 |
27DAP/reference | 1.06015 | 0.777 |
39DAP/reference | 1.06209 | 0.437 |
41DAP/reference | 0.9695 | 0.512 |
42DAP/reference | 0.90929 | 0.361 |
43DAP/reference | 1.02069 | 1 |
47DAP/reference | 1.1312 | 0.133 |
52DAP/reference | 0.82022 | 0.232 |
57DAP/reference | 0.80425 | 0.038 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97206 | 1 |
26DAP/20DAP | 0.90812 | 1 |
34DAP/26DAP | 1.09759 | 1 |
51DAP/34DAP | 1.14584 | 0.524 |
52DAP/51DAP | 1.10038 | 0.503 |
53DAP/52DAP | 1.22249 | 0.23 |
55DAP/53DAP | 1.03124 | 1 |
57DAP/55DAP | 1.13769 | 0.927 |
62DAP/57DAP | 1.16326 | |
68DAP/62DAP | 1.14004 | 0.971 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91118 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.45818 | 0.632 |
Immature Eggplant/Mature Eggplant | 0.26658 | 0.057 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.95841 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.96247 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.17016 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.17072 | |
4-3-2/M82 | 1.01613 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.92086 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.93553 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.91069 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.41762 | |
IL2-6/WTpooled | 0.98731 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.99975 | 1 |
IL12-4/WTpooled | 1.11199 | 0.695 |
IL1-4/WTpooled | 1.03971 | |
WT/WTpooled | 0.93957 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07012 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 2.33402 | |
DC3000/delta hrp 6h | 1.54749 | |
DC3000/delta hrp 12h | 1.08588 | 1 |
DC3000/delta hrp 24h | 1.04203 | |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.3908 | |
DC3000 delta B/DC3000 delta AB | 0.69425 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 0.34383 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01734 | 1 |
Var 0h | 1.07855 | 0.98 |
Var 12h I row2-row1 | 0.97997 | 1 |
Var 12h NI row2-row1 | 1.0385 | 1 |
Var 36h I row2-row1 | 0.94695 | 1 |
Var 36h NI row2-row1 | 0.76367 | 0.329 |
Var 60h I row2-row1 | 0.90862 | 0.293 |
Var 60h NI row2-row1 | 1.14187 | 0.904 |
Time course 0hI-0hNI | 0.98946 | 1 |
Time course 12hI-12hNI | 1.15496 | 0.392 |
Time course 36hI-36hNI | 1.11425 | 0.08 |
Time course 60hI-60hNI | 2.0908 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.87779 | 0.171 |
transgenic ySAMdc/azygous control (breaker) | 2.6061 | 1 |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00139 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93232 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.764 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.01963 | 1 |
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