Expression of 1-1-4.1.7.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.104290.656
27DAP/17DAP1.283950.735
39DAP/27DAP0.98650.798
41DAP/39DAP1.046060.657
42DAP/41DAP1.093980.873
43DAP/42DAP1.028571
47DAP/43DAP0.967390.859
52DAP/47DAP0.804240.503
57DAP/52DAP1.119430.859

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.132150.218
17DAP/reference1.147440.148
27DAP/reference1.04280.548
39DAP/reference1.138550.079
41DAP/reference1.108460.054
42DAP/reference0.90270.056
43DAP/reference0.980020.708
47DAP/reference0.981650.445
52DAP/reference0.91070.131
57DAP/reference0.908170.131

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.854870.164
27DAP/17DAP0.962520.878
39DAP/27DAP1.126570.519
41DAP/39DAP0.919150.793
42DAP/41DAP0.86050.276
43DAP/42DAP1.170810.297
47DAP/43DAP1.05660.884
52DAP/47DAP1.017670.956
57DAP/52DAP0.939480.577
57DAP/7DAP1.454471

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.027170.961
17DAP/reference1.099861
27DAP/reference1.011310.748
39DAP/reference1.057130.909
41DAP/reference1.364090.077
42DAP/reference1.025460.686
43DAP/reference1.061780.788
47DAP/reference0.947590.671
52DAP/reference0.933740.363
57DAP/reference1.02151

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.172410.47
17DAP/reference1.152630.471
27DAP/reference0.975790.519
39DAP/reference0.800650.069
41DAP/reference0.900670.124
42DAP/reference0.912810.261
43DAP/reference1.10320.435
47DAP/reference0.986650.625
52DAP/reference1.09290.208
57DAP/reference1.086750.868

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.122130.338
17DAP/reference0.968410.647
27DAP/reference1.060150.777
39DAP/reference1.062090.437
41DAP/reference0.96950.512
42DAP/reference0.909290.361
43DAP/reference1.020691
47DAP/reference1.13120.133
52DAP/reference0.820220.232
57DAP/reference0.804250.038

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.972061
26DAP/20DAP0.908121
34DAP/26DAP1.097591
51DAP/34DAP1.145840.524
52DAP/51DAP1.100380.503
53DAP/52DAP1.222490.23
55DAP/53DAP1.031241
57DAP/55DAP1.137690.927
62DAP/57DAP1.16326
68DAP/62DAP1.140040.971
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.911180.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.458180.632
Immature Eggplant/Mature Eggplant0.266580.057
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.958411

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.962471
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.17016
4-1-1/M82N/AN/A
4-1/M821.17072
4-3-2/M821.016131
4-3/M82N/AN/A
5-3/M820.920861
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.93553
7-2/M82N/AN/A
9-3-2/M820.910690.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.41762
IL2-6/WTpooled0.987311
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.999751
IL12-4/WTpooled1.111990.695
IL1-4/WTpooled1.03971
WT/WTpooled0.939571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.070120.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h2.33402
DC3000/delta hrp 6h1.54749
DC3000/delta hrp 12h1.085881
DC3000/delta hrp 24h1.04203

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.3908
DC3000 delta B/DC3000 delta AB0.694250.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.343830.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.017341
Var 0h1.078550.98
Var 12h I row2-row10.979971
Var 12h NI row2-row11.03851
Var 36h I row2-row10.946951
Var 36h NI row2-row10.763670.329
Var 60h I row2-row10.908620.293
Var 60h NI row2-row11.141870.904
Time course 0hI-0hNI0.989461
Time course 12hI-12hNI1.154960.392
Time course 36hI-36hNI1.114250.08
Time course 60hI-60hNI2.09080.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.877790.171
transgenic ySAMdc/azygous control (breaker)2.60611
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.001391

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.932320.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.7641
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.019631