Expression of 1-1-4.1.8.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81788 | 0.324 |
27DAP/17DAP | 0.80197 | 0.452 |
39DAP/27DAP | 1.23804 | 0.725 |
41DAP/39DAP | 0.90093 | 0.591 |
42DAP/41DAP | 0.84432 | 1 |
43DAP/42DAP | 0.98468 | 0.93 |
47DAP/43DAP | 0.7156 | 0.183 |
52DAP/47DAP | 0.90075 | 0.702 |
57DAP/52DAP | 0.91443 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97334 | 0.526 |
17DAP/reference | 1.05464 | 0.427 |
27DAP/reference | 1.07593 | 0.264 |
39DAP/reference | 1.01532 | 0.889 |
41DAP/reference | 1.15035 | 0.133 |
42DAP/reference | 0.94292 | 0.182 |
43DAP/reference | 0.99209 | 0.82 |
47DAP/reference | 0.9994 | 0.72 |
52DAP/reference | 0.85087 | 0.118 |
57DAP/reference | 0.80332 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76126 | 0.17 |
27DAP/17DAP | 1.10734 | 0.805 |
39DAP/27DAP | 1.02043 | 0.799 |
41DAP/39DAP | 1.03122 | 0.914 |
42DAP/41DAP | 1.07986 | 0.904 |
43DAP/42DAP | 1.19014 | 0.25 |
47DAP/43DAP | 1.10824 | 0.581 |
52DAP/47DAP | 0.66163 | 0.131 |
57DAP/52DAP | 1.25189 | 0.232 |
57DAP/7DAP | 1.50687 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28572 | 0.053 |
17DAP/reference | 1.0236 | 1 |
27DAP/reference | 1.15651 | 0.035 |
39DAP/reference | 1.38083 | 0.044 |
41DAP/reference | 1.27455 | 0.083 |
42DAP/reference | 1.47265 | 0.024 |
43DAP/reference | 1.41733 | 0.009 |
47DAP/reference | 1.37839 | 0.073 |
52DAP/reference | 1.48704 | 0.013 |
57DAP/reference | 1.19443 | 0.25 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08148 | 0.559 |
17DAP/reference | 0.94921 | 0.347 |
27DAP/reference | 0.92926 | 0.249 |
39DAP/reference | 0.99341 | 0.569 |
41DAP/reference | 0.79785 | 0.083 |
42DAP/reference | 0.94797 | 0.355 |
43DAP/reference | 1.12202 | 0.489 |
47DAP/reference | 0.99712 | 0.749 |
52DAP/reference | 0.94949 | 0.38 |
57DAP/reference | 1.18399 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10835 | 0.287 |
17DAP/reference | 2.07083 | 0.298 |
27DAP/reference | 1.10797 | 0.575 |
39DAP/reference | 1.16872 | 0.151 |
41DAP/reference | 1.08665 | 0.714 |
42DAP/reference | 0.9521 | 0.552 |
43DAP/reference | 0.98097 | 0.639 |
47DAP/reference | 0.99283 | 0.626 |
52DAP/reference | 0.95512 | 0.538 |
57DAP/reference | 0.77315 | 0.044 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99299 | 1 |
26DAP/20DAP | 1.01492 | 1 |
34DAP/26DAP | 0.99394 | 0.945 |
51DAP/34DAP | 1.45013 | 0.303 |
52DAP/51DAP | 0.92116 | 1 |
53DAP/52DAP | 1.12329 | 0.91 |
55DAP/53DAP | 1.07774 | 0.922 |
57DAP/55DAP | 0.98249 | 0.854 |
62DAP/57DAP | 0.99267 | 0.994 |
68DAP/62DAP | 0.76543 | 0.118 |
68DAP/14DAP | 0.68418 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.55169 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.7494 | 0.437 |
Immature Eggplant/Mature Eggplant | 2.0502 | 0.06 |
Ripe Pepper/Ripe Tomato | 0.99584 | 1 |
Mature Eggplant/Ripe Tomato | 1.08388 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.78555 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.93151 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.67156 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.91375 | |
4-3-2/M82 | 0.71444 | |
4-3/M82 | 0.99136 | 1 |
5-3/M82 | 1.03378 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.19333 | |
7-2/M82 | 1.03942 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.48938 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.13064 | 1 |
IL12-4/WTpooled | 1.53693 | 0.516 |
IL1-4/WTpooled | 1.12641 | 1 |
WT/WTpooled | 1.07767 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97546 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.18886 | 0.396 |
DC3000/delta hrp 6h | 0.72802 | 0.786 |
DC3000/delta hrp 12h | 1.0499 | 1 |
DC3000/delta hrp 24h | 1.0059 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.34626 | |
DC3000 delta B/DC3000 delta AB | 1.13298 | 0.381 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00706 | 1 |
Exp 36h | 1.16313 | 1 |
Exp 60h | 1.2772 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0245 | 1 |
Var 0h | 0.48539 | 1 |
Var 12h I row2-row1 | 1.14193 | 0.506 |
Var 12h NI row2-row1 | 1.21411 | 0.34 |
Var 36h I row2-row1 | 0.96848 | 1 |
Var 36h NI row2-row1 | 0.98329 | 0.791 |
Var 60h I row2-row1 | 0.86595 | 0.285 |
Var 60h NI row2-row1 | 1.01855 | 1 |
Time course 0hI-0hNI | 1.01173 | 1 |
Time course 12hI-12hNI | 1.02981 | 0.709 |
Time course 36hI-36hNI | 1.14704 | 0.08 |
Time course 60hI-60hNI | 1.64974 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07303 | 0.36 |
transgenic ySAMdc/azygous control (breaker) | 0.94047 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.85703 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08853 | 0.057 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.83235 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.96197 | 1 |
Manapal/WT (break) | 0.95389 | 1 |
Manapal/WT (red) | 1.05774 | 1 |
|
|