Expression of 1-1-4.1.8.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.4314 | 0.63 |
27DAP/17DAP | 1.3402 | 0.783 |
39DAP/27DAP | 1.42303 | 0.21 |
41DAP/39DAP | 1.11311 | 0.638 |
42DAP/41DAP | 1.30243 | 0.536 |
43DAP/42DAP | 0.95029 | 0.867 |
47DAP/43DAP | 1.46665 | 0.223 |
52DAP/47DAP | 1.13313 | 0.913 |
57DAP/52DAP | 0.95778 | 0.956 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96077 | 0.362 |
17DAP/reference | 1.01786 | 0.528 |
27DAP/reference | 1.04114 | 0.637 |
39DAP/reference | 0.9112 | 0.487 |
41DAP/reference | 1.00907 | 0.91 |
42DAP/reference | 0.97865 | 0.295 |
43DAP/reference | 0.99554 | 0.924 |
47DAP/reference | 1.20389 | 0.004 |
52DAP/reference | 1.16972 | 0.195 |
57DAP/reference | 1.00073 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00577 | 1 |
27DAP/17DAP | 0.99106 | 0.943 |
39DAP/27DAP | 1.1497 | 0.163 |
41DAP/39DAP | 0.85004 | 0.096 |
42DAP/41DAP | 1.0541 | 0.694 |
43DAP/42DAP | 1.04943 | 0.103 |
47DAP/43DAP | 1.07559 | 0.352 |
52DAP/47DAP | 1.03063 | 0.868 |
57DAP/52DAP | 1.03397 | 0.806 |
57DAP/7DAP | 1.14874 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98153 | 0.613 |
17DAP/reference | 0.99676 | 0.599 |
27DAP/reference | 1.16781 | 0.246 |
39DAP/reference | 1.10209 | 0.486 |
41DAP/reference | 0.95054 | 0.341 |
42DAP/reference | 0.95413 | 0.338 |
43DAP/reference | 1.03311 | 0.707 |
47DAP/reference | 1.12829 | 0.353 |
52DAP/reference | 1.26788 | 0.183 |
57DAP/reference | 1.24313 | 0.043 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94909 | 0.548 |
17DAP/reference | 0.97324 | 0.422 |
27DAP/reference | 0.93646 | 0.249 |
39DAP/reference | 0.92448 | 0.159 |
41DAP/reference | 0.94773 | 0.364 |
42DAP/reference | 0.92995 | 0.135 |
43DAP/reference | 0.95222 | 0.438 |
47DAP/reference | 0.95593 | 0.023 |
52DAP/reference | 0.90695 | 0.187 |
57DAP/reference | 0.95708 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96917 | 0.526 |
17DAP/reference | 1.00078 | 0.87 |
27DAP/reference | 0.9374 | 0.27 |
39DAP/reference | 0.96018 | 0.36 |
41DAP/reference | 1.01896 | 1 |
42DAP/reference | 0.93545 | 0.552 |
43DAP/reference | 0.90617 | 0.12 |
47DAP/reference | 1.56316 | 0.026 |
52DAP/reference | 1.38369 | 0.062 |
57DAP/reference | 2.18986 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00426 | 1 |
26DAP/20DAP | 0.92573 | 0.512 |
34DAP/26DAP | 1.06523 | 0.304 |
51DAP/34DAP | 0.95797 | 0.727 |
52DAP/51DAP | 1.04379 | 0.742 |
53DAP/52DAP | 1.09734 | 0.662 |
55DAP/53DAP | 1.03768 | 0.842 |
57DAP/55DAP | 0.93008 | 0.647 |
62DAP/57DAP | 1.27127 | 0.303 |
68DAP/62DAP | 1.00906 | 1 |
68DAP/14DAP | 0.86172 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.47237 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72209 | 0.196 |
Mature Green Tomato/Ripe Tomato | 0.36978 | 0.018 |
Immature Eggplant/Mature Eggplant | 1.78738 | 0.053 |
Ripe Pepper/Ripe Tomato | 0.13249 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.19263 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01694 | 1 |
1-1-2/M82 | 1.28482 | 1 |
12-2/M82 | 1.05887 | 1 |
12-4/M82 | 1.2329 | 1 |
1-3/M82 | 1.31296 | 0.277 |
2-1-1/M82 | 0.94423 | 0.683 |
2-1/M82 | 0.66174 | 0.322 |
2-6/M82 | 0.99213 | 1 |
3-2/M82 | 0.93678 | |
4-1-1/M82 | 0.99277 | 1 |
4-1/M82 | 1.04701 | |
4-3-2/M82 | 0.90022 | 0.698 |
4-3/M82 | 0.95225 | 0.611 |
5-3/M82 | 1.00434 | 1 |
6-2/M82 | 0.96281 | 1 |
6-3/M82 | 1.059 | 1 |
7-1/M82 | 0.89624 | 0.441 |
7-2/M82 | 0.99476 | 1 |
9-3-2/M82 | 1.25493 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88772 | 0.321 |
IL2-6/WTpooled | 1.191 | 0.584 |
IL7-5/WTpooled | 0.87985 | 1 |
IL7-3/WTpooled | 1.11555 | 1 |
IL12-4/WTpooled | 0.91997 | 0.71 |
IL1-4/WTpooled | 1.00583 | 1 |
WT/WTpooled | 1.01381 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21107 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9735 | 1 |
DC3000/delta hrp 6h | 1.15564 | 1 |
DC3000/delta hrp 12h | 1.06128 | 1 |
DC3000/delta hrp 24h | 1.10869 | 0.604 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.14771 | 0.25 |
DC3000 delta B/DC3000 delta AB | 1.03586 | 0.609 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.69878 | 1 |
Exp 36h | 1.42606 | 0.489 |
Exp 60h | 1.69303 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01309 | 1 |
Var 0h | 0.46408 | 1 |
Var 12h I row2-row1 | 1.02553 | 0.544 |
Var 12h NI row2-row1 | 0.92388 | 0.627 |
Var 36h I row2-row1 | 1.0409 | 0.742 |
Var 36h NI row2-row1 | 0.89983 | 0.413 |
Var 60h I row2-row1 | 0.97705 | 0.952 |
Var 60h NI row2-row1 | 1.11879 | 0.904 |
Time course 0hI-0hNI | 1.04681 | 0.574 |
Time course 12hI-12hNI | 0.97957 | 0.855 |
Time course 36hI-36hNI | 1.0779 | 0.009 |
Time course 60hI-60hNI | 1.48933 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.78556 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.74866 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.20051 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.24913 | 0.026 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99438 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.37087 | 0.14 |
Manapal/WT (break) | 1.04692 | 1 |
Manapal/WT (red) | 1.74587 | 0.164 |
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