Expression of 1-1-4.1.8.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.43140.63
27DAP/17DAP1.34020.783
39DAP/27DAP1.423030.21
41DAP/39DAP1.113110.638
42DAP/41DAP1.302430.536
43DAP/42DAP0.950290.867
47DAP/43DAP1.466650.223
52DAP/47DAP1.133130.913
57DAP/52DAP0.957780.956

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.960770.362
17DAP/reference1.017860.528
27DAP/reference1.041140.637
39DAP/reference0.91120.487
41DAP/reference1.009070.91
42DAP/reference0.978650.295
43DAP/reference0.995540.924
47DAP/reference1.203890.004
52DAP/reference1.169720.195
57DAP/reference1.00073

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.005771
27DAP/17DAP0.991060.943
39DAP/27DAP1.14970.163
41DAP/39DAP0.850040.096
42DAP/41DAP1.05410.694
43DAP/42DAP1.049430.103
47DAP/43DAP1.075590.352
52DAP/47DAP1.030630.868
57DAP/52DAP1.033970.806
57DAP/7DAP1.148741

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.981530.613
17DAP/reference0.996760.599
27DAP/reference1.167810.246
39DAP/reference1.102090.486
41DAP/reference0.950540.341
42DAP/reference0.954130.338
43DAP/reference1.033110.707
47DAP/reference1.128290.353
52DAP/reference1.267880.183
57DAP/reference1.243130.043

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.949090.548
17DAP/reference0.973240.422
27DAP/reference0.936460.249
39DAP/reference0.924480.159
41DAP/reference0.947730.364
42DAP/reference0.929950.135
43DAP/reference0.952220.438
47DAP/reference0.955930.023
52DAP/reference0.906950.187
57DAP/reference0.957080.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.969170.526
17DAP/reference1.000780.87
27DAP/reference0.93740.27
39DAP/reference0.960180.36
41DAP/reference1.018961
42DAP/reference0.935450.552
43DAP/reference0.906170.12
47DAP/reference1.563160.026
52DAP/reference1.383690.062
57DAP/reference2.189860.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.004261
26DAP/20DAP0.925730.512
34DAP/26DAP1.065230.304
51DAP/34DAP0.957970.727
52DAP/51DAP1.043790.742
53DAP/52DAP1.097340.662
55DAP/53DAP1.037680.842
57DAP/55DAP0.930080.647
62DAP/57DAP1.271270.303
68DAP/62DAP1.009061
68DAP/14DAP0.861720.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.472370.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.722090.196
Mature Green Tomato/Ripe Tomato0.369780.018
Immature Eggplant/Mature Eggplant1.787380.053
Ripe Pepper/Ripe Tomato0.132490.224
Mature Eggplant/Ripe Tomato0.192630.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.016941
1-1-2/M821.284821
12-2/M821.058871
12-4/M821.23291
1-3/M821.312960.277
2-1-1/M820.944230.683
2-1/M820.661740.322
2-6/M820.992131
3-2/M820.93678
4-1-1/M820.992771
4-1/M821.04701
4-3-2/M820.900220.698
4-3/M820.952250.611
5-3/M821.004341
6-2/M820.962811
6-3/M821.0591
7-1/M820.896240.441
7-2/M820.994761
9-3-2/M821.254931

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.887720.321
IL2-6/WTpooled1.1910.584
IL7-5/WTpooled0.879851
IL7-3/WTpooled1.115551
IL12-4/WTpooled0.919970.71
IL1-4/WTpooled1.005831
WT/WTpooled1.013811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.211070.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.97351
DC3000/delta hrp 6h1.155641
DC3000/delta hrp 12h1.061281
DC3000/delta hrp 24h1.108690.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.147710.25
DC3000 delta B/DC3000 delta AB1.035860.609

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.698781
Exp 36h1.426060.489
Exp 60h1.693030.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.013091
Var 0h0.464081
Var 12h I row2-row11.025530.544
Var 12h NI row2-row10.923880.627
Var 36h I row2-row11.04090.742
Var 36h NI row2-row10.899830.413
Var 60h I row2-row10.977050.952
Var 60h NI row2-row11.118790.904
Time course 0hI-0hNI1.046810.574
Time course 12hI-12hNI0.979570.855
Time course 36hI-36hNI1.07790.009
Time course 60hI-60hNI1.489330.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.785560.348
transgenic ySAMdc/azygous control (breaker)0.748660.251
transgenic ySAMdc/azygous control (red)1.200511

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.249130.026

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.994381

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.370870.14
Manapal/WT (break)1.046921
Manapal/WT (red)1.745870.164