Expression of 1-1-4.1.8.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03509 | 0.964 |
27DAP/17DAP | 0.91154 | 0.804 |
39DAP/27DAP | 0.99973 | 0.857 |
41DAP/39DAP | 0.6819 | 0.083 |
42DAP/41DAP | 1.07948 | 0.941 |
43DAP/42DAP | 0.92896 | 0.705 |
47DAP/43DAP | 0.86206 | 0.565 |
52DAP/47DAP | 1.03896 | 0.946 |
57DAP/52DAP | 1.30479 | 0.907 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32362 | 0.013 |
17DAP/reference | 1.07465 | 0.412 |
27DAP/reference | 1.22983 | 0.089 |
39DAP/reference | 1.05375 | 0.8 |
41DAP/reference | 0.92692 | 0.542 |
42DAP/reference | 1.23397 | 0.021 |
43DAP/reference | 0.94425 | 0.36 |
47DAP/reference | 1.17063 | 0.175 |
52DAP/reference | 0.81678 | 0.026 |
57DAP/reference | 1.01708 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1526 | 0.258 |
27DAP/17DAP | 0.94657 | 0.748 |
39DAP/27DAP | 0.81984 | 0.046 |
41DAP/39DAP | 1.0889 | 0.579 |
42DAP/41DAP | 1.08576 | 0.582 |
43DAP/42DAP | 0.89035 | 0.256 |
47DAP/43DAP | 0.92583 | 0.466 |
52DAP/47DAP | 1.03489 | 0.915 |
57DAP/52DAP | 1.21775 | 0.238 |
57DAP/7DAP | 1.6436 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29341 | 0.046 |
17DAP/reference | 1.60496 | 0.006 |
27DAP/reference | 1.46106 | 0.009 |
39DAP/reference | 1.72918 | 0.006 |
41DAP/reference | 1.50348 | 0.012 |
42DAP/reference | 1.33961 | 0.03 |
43DAP/reference | 1.13187 | 0.241 |
47DAP/reference | 1.26486 | 0.036 |
52DAP/reference | 1.29314 | 0.007 |
57DAP/reference | 1.37167 | 0.026 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10545 | 0.3 |
17DAP/reference | 1.443 | 0.008 |
27DAP/reference | 1.27142 | 0.045 |
39DAP/reference | 1.28419 | 0.035 |
41DAP/reference | 1.16731 | 0.209 |
42DAP/reference | 1.16978 | 0.102 |
43DAP/reference | 1.30947 | 0.026 |
47DAP/reference | 1.25218 | 0.008 |
52DAP/reference | 1.11286 | 0.124 |
57DAP/reference | 1.19291 | 0.054 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3 | 0.025 |
17DAP/reference | 1.1377 | 0.398 |
27DAP/reference | 1.29184 | 0.023 |
39DAP/reference | 1.282 | 0.026 |
41DAP/reference | 1.22232 | 0.047 |
42DAP/reference | 1.05652 | 0.716 |
43DAP/reference | 0.99278 | 0.738 |
47DAP/reference | 0.99812 | 0.708 |
52DAP/reference | 1.13859 | 0.205 |
57DAP/reference | 0.80671 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92409 | 1 |
26DAP/20DAP | 1.16425 | 0.654 |
34DAP/26DAP | 1.28797 | 1 |
51DAP/34DAP | 0.89587 | 0.41 |
52DAP/51DAP | 0.95378 | 1 |
53DAP/52DAP | 0.88973 | 0.498 |
55DAP/53DAP | 1.01161 | 0.908 |
57DAP/55DAP | 1.26096 | 0.881 |
62DAP/57DAP | 1.30157 | 0.133 |
68DAP/62DAP | 0.81418 | 0.543 |
68DAP/14DAP | 0.64011 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.30171 | 0.026 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.78827 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.4156 | 0.166 |
Immature Eggplant/Mature Eggplant | 0.95759 | 0.72 |
Ripe Pepper/Ripe Tomato | 0.39171 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.31517 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01068 | 1 |
1-1-2/M82 | 0.85365 | |
12-2/M82 | 0.7144 | 0.678 |
12-4/M82 | 0.9863 | 1 |
1-3/M82 | 1.52566 | 0.277 |
2-1-1/M82 | 1.03307 | 1 |
2-1/M82 | 0.79484 | 0.74 |
2-6/M82 | 1.08326 | 0.505 |
3-2/M82 | 1.18666 | |
4-1-1/M82 | 1.32146 | 1 |
4-1/M82 | 0.81419 | |
4-3-2/M82 | 1.92096 | |
4-3/M82 | 1.26643 | 1 |
5-3/M82 | 1.27402 | 0.467 |
6-2/M82 | 1.58081 | |
6-3/M82 | 0.91333 | 1 |
7-1/M82 | 1.01196 | |
7-2/M82 | 1.4814 | 0.291 |
9-3-2/M82 | 1.23824 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98882 | 1 |
IL2-6/WTpooled | 1.11866 | 0.584 |
IL7-5/WTpooled | 0.99524 | 1 |
IL7-3/WTpooled | 0.91772 | 0.418 |
IL12-4/WTpooled | 0.96701 | 0.581 |
IL1-4/WTpooled | 1.02664 | 1 |
WT/WTpooled | 0.98583 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.24876 | 0.154 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0404 | 0.921 |
DC3000/delta hrp 6h | 0.9956 | 0.95 |
DC3000/delta hrp 12h | 1.03857 | 1 |
DC3000/delta hrp 24h | 1.01166 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.98742 | 1 |
DC3000 delta B/DC3000 delta AB | 1.16743 | 0.345 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.85759 | 1 |
Exp 36h | 1.12727 | 1 |
Exp 60h | 0.9637 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02245 | 1 |
Var 0h | 0.44951 | 0.332 |
Var 12h I row2-row1 | 1.0651 | 0.692 |
Var 12h NI row2-row1 | 0.89401 | 0.713 |
Var 36h I row2-row1 | 1.04819 | 1 |
Var 36h NI row2-row1 | 1.59081 | 1 |
Var 60h I row2-row1 | 1.09529 | 1 |
Var 60h NI row2-row1 | 0.97778 | 1 |
Time course 0hI-0hNI | 0.94483 | 0.482 |
Time course 12hI-12hNI | 0.9043 | 0.147 |
Time course 36hI-36hNI | 0.88124 | 0.05 |
Time course 60hI-60hNI | 0.73004 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98835 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.00996 | 1 |
transgenic ySAMdc/azygous control (red) | 1.06805 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.18225 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89183 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.61674 | 0.172 |
Manapal/WT (break) | 0.89002 | 1 |
Manapal/WT (red) | 0.86732 | 0.183 |
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