Expression of 1-1-4.1.8.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.035090.964
27DAP/17DAP0.911540.804
39DAP/27DAP0.999730.857
41DAP/39DAP0.68190.083
42DAP/41DAP1.079480.941
43DAP/42DAP0.928960.705
47DAP/43DAP0.862060.565
52DAP/47DAP1.038960.946
57DAP/52DAP1.304790.907

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.323620.013
17DAP/reference1.074650.412
27DAP/reference1.229830.089
39DAP/reference1.053750.8
41DAP/reference0.926920.542
42DAP/reference1.233970.021
43DAP/reference0.944250.36
47DAP/reference1.170630.175
52DAP/reference0.816780.026
57DAP/reference1.017081

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.15260.258
27DAP/17DAP0.946570.748
39DAP/27DAP0.819840.046
41DAP/39DAP1.08890.579
42DAP/41DAP1.085760.582
43DAP/42DAP0.890350.256
47DAP/43DAP0.925830.466
52DAP/47DAP1.034890.915
57DAP/52DAP1.217750.238
57DAP/7DAP1.64361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.293410.046
17DAP/reference1.604960.006
27DAP/reference1.461060.009
39DAP/reference1.729180.006
41DAP/reference1.503480.012
42DAP/reference1.339610.03
43DAP/reference1.131870.241
47DAP/reference1.264860.036
52DAP/reference1.293140.007
57DAP/reference1.371670.026

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.105450.3
17DAP/reference1.4430.008
27DAP/reference1.271420.045
39DAP/reference1.284190.035
41DAP/reference1.167310.209
42DAP/reference1.169780.102
43DAP/reference1.309470.026
47DAP/reference1.252180.008
52DAP/reference1.112860.124
57DAP/reference1.192910.054

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.30.025
17DAP/reference1.13770.398
27DAP/reference1.291840.023
39DAP/reference1.2820.026
41DAP/reference1.222320.047
42DAP/reference1.056520.716
43DAP/reference0.992780.738
47DAP/reference0.998120.708
52DAP/reference1.138590.205
57DAP/reference0.806710.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.924091
26DAP/20DAP1.164250.654
34DAP/26DAP1.287971
51DAP/34DAP0.895870.41
52DAP/51DAP0.953781
53DAP/52DAP0.889730.498
55DAP/53DAP1.011610.908
57DAP/55DAP1.260960.881
62DAP/57DAP1.301570.133
68DAP/62DAP0.814180.543
68DAP/14DAP0.640110.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.301710.026

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.788270.058
Mature Green Tomato/Ripe Tomato1.41560.166
Immature Eggplant/Mature Eggplant0.957590.72
Ripe Pepper/Ripe Tomato0.391710.224
Mature Eggplant/Ripe Tomato0.315170.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.010681
1-1-2/M820.85365
12-2/M820.71440.678
12-4/M820.98631
1-3/M821.525660.277
2-1-1/M821.033071
2-1/M820.794840.74
2-6/M821.083260.505
3-2/M821.18666
4-1-1/M821.321461
4-1/M820.81419
4-3-2/M821.92096
4-3/M821.266431
5-3/M821.274020.467
6-2/M821.58081
6-3/M820.913331
7-1/M821.01196
7-2/M821.48140.291
9-3-2/M821.23824

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.988821
IL2-6/WTpooled1.118660.584
IL7-5/WTpooled0.995241
IL7-3/WTpooled0.917720.418
IL12-4/WTpooled0.967010.581
IL1-4/WTpooled1.026641
WT/WTpooled0.985831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.248760.154

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.04040.921
DC3000/delta hrp 6h0.99560.95
DC3000/delta hrp 12h1.038571
DC3000/delta hrp 24h1.011661

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.987421
DC3000 delta B/DC3000 delta AB1.167430.345

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.857591
Exp 36h1.127271
Exp 60h0.96370.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.022451
Var 0h0.449510.332
Var 12h I row2-row11.06510.692
Var 12h NI row2-row10.894010.713
Var 36h I row2-row11.048191
Var 36h NI row2-row11.590811
Var 60h I row2-row11.095291
Var 60h NI row2-row10.977781
Time course 0hI-0hNI0.944830.482
Time course 12hI-12hNI0.90430.147
Time course 36hI-36hNI0.881240.05
Time course 60hI-60hNI0.730040.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.988350.862
transgenic ySAMdc/azygous control (breaker)1.009961
transgenic ySAMdc/azygous control (red)1.068050.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.182250.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.891830.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.616740.172
Manapal/WT (break)0.890021
Manapal/WT (red)0.867320.183