Expression of 1-1-4.1.9.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.12363 | 0.561 |
27DAP/17DAP | 0.84382 | 0.801 |
39DAP/27DAP | 0.91231 | 0.682 |
41DAP/39DAP | 1.34542 | 0.657 |
42DAP/41DAP | 1.21587 | 0.938 |
43DAP/42DAP | 1.64737 | 0.636 |
47DAP/43DAP | 1.29974 | 0.979 |
52DAP/47DAP | 1.81766 | 0.605 |
57DAP/52DAP | 1.36531 | 0.883 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27423 | 0.265 |
17DAP/reference | 1.35283 | 0.318 |
27DAP/reference | 1.38536 | 0.221 |
39DAP/reference | 1.18288 | 0.191 |
41DAP/reference | 1.18456 | 0.91 |
42DAP/reference | 1.04907 | 0.398 |
43DAP/reference | 0.99374 | 0.882 |
47DAP/reference | 0.48751 | 0.05 |
52DAP/reference | 1.99632 | 0.576 |
57DAP/reference | 0.68409 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09108 | 0.801 |
27DAP/17DAP | 0.83075 | 0.821 |
39DAP/27DAP | 1.22985 | |
41DAP/39DAP | 0.50614 | |
42DAP/41DAP | 1.51398 | 0.039 |
43DAP/42DAP | 1.91874 | |
47DAP/43DAP | 1.08542 | 0.909 |
52DAP/47DAP | 1.80768 | 0.962 |
57DAP/52DAP | 0.8638 | 0.709 |
57DAP/7DAP | 0.97911 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84824 | |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.62878 | |
39DAP/reference | 3.07286 | |
41DAP/reference | N/A | N/A |
42DAP/reference | N/A | N/A |
43DAP/reference | 0.99725 | |
47DAP/reference | 0.53571 | |
52DAP/reference | N/A | N/A |
57DAP/reference | N/A | N/A |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32597 | 1 |
17DAP/reference | 0.79862 | 0.201 |
27DAP/reference | 0.60658 | 0.008 |
39DAP/reference | 0.89732 | 0.339 |
41DAP/reference | 1.12219 | 0.752 |
42DAP/reference | N/A | N/A |
43DAP/reference | 0.83924 | 0.561 |
47DAP/reference | 1.3931 | |
52DAP/reference | 0.96725 | 0.5 |
57DAP/reference | 0.97966 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.57983 | |
17DAP/reference | N/A | N/A |
27DAP/reference | 1.11792 | |
39DAP/reference | N/A | N/A |
41DAP/reference | N/A | N/A |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.30968 | |
47DAP/reference | 0.5864 | 0.249 |
52DAP/reference | 0.90399 | |
57DAP/reference | 0.46087 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.54397 | 0.966 |
26DAP/20DAP | 1.76152 | |
34DAP/26DAP | 1.14071 | 1 |
51DAP/34DAP | 0.90069 | 0.631 |
52DAP/51DAP | 0.81406 | |
53DAP/52DAP | 0.73685 | 0.489 |
55DAP/53DAP | 0.79197 | |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | 1.55987 | |
68DAP/62DAP | 0.98456 | 0.885 |
68DAP/14DAP | 0.78015 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.02306 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.53021 | 0.277 |
IL2-6/WTpooled | 0.51374 | 0.358 |
IL7-5/WTpooled | 1.14907 | 0.792 |
IL7-3/WTpooled | 1.20066 | 0.362 |
IL12-4/WTpooled | 1.37698 | 0.516 |
IL1-4/WTpooled | 0.85481 | 0.562 |
WT/WTpooled | 0.96283 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.94389 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 3.72692 | 0.041 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.12403 | 1 |
Manapal/WT (red) | N/A | N/A |
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