Expression of 1-1-4.1.9.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.123630.561
27DAP/17DAP0.843820.801
39DAP/27DAP0.912310.682
41DAP/39DAP1.345420.657
42DAP/41DAP1.215870.938
43DAP/42DAP1.647370.636
47DAP/43DAP1.299740.979
52DAP/47DAP1.817660.605
57DAP/52DAP1.365310.883

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.274230.265
17DAP/reference1.352830.318
27DAP/reference1.385360.221
39DAP/reference1.182880.191
41DAP/reference1.184560.91
42DAP/reference1.049070.398
43DAP/reference0.993740.882
47DAP/reference0.487510.05
52DAP/reference1.996320.576
57DAP/reference0.68409

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.091080.801
27DAP/17DAP0.830750.821
39DAP/27DAP1.22985
41DAP/39DAP0.50614
42DAP/41DAP1.513980.039
43DAP/42DAP1.91874
47DAP/43DAP1.085420.909
52DAP/47DAP1.807680.962
57DAP/52DAP0.86380.709
57DAP/7DAP0.97911

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.84824
17DAP/referenceN/AN/A
27DAP/reference0.62878
39DAP/reference3.07286
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/reference0.99725
47DAP/reference0.53571
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.325971
17DAP/reference0.798620.201
27DAP/reference0.606580.008
39DAP/reference0.897320.339
41DAP/reference1.122190.752
42DAP/referenceN/AN/A
43DAP/reference0.839240.561
47DAP/reference1.3931
52DAP/reference0.967250.5
57DAP/reference0.97966

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.57983
17DAP/referenceN/AN/A
27DAP/reference1.11792
39DAP/referenceN/AN/A
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/reference1.30968
47DAP/reference0.58640.249
52DAP/reference0.90399
57DAP/reference0.46087

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.543970.966
26DAP/20DAP1.76152
34DAP/26DAP1.140711
51DAP/34DAP0.900690.631
52DAP/51DAP0.81406
53DAP/52DAP0.736850.489
55DAP/53DAP0.79197
57DAP/55DAPN/AN/A
62DAP/57DAP1.55987
68DAP/62DAP0.984560.885
68DAP/14DAP0.780151

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.023061

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.530210.277
IL2-6/WTpooled0.513740.358
IL7-5/WTpooled1.149070.792
IL7-3/WTpooled1.200660.362
IL12-4/WTpooled1.376980.516
IL1-4/WTpooled0.854810.562
WT/WTpooled0.962831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.943891
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control3.726920.041

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.124031
Manapal/WT (red)N/AN/A