Tomato Functional Genomics Database (TFGD)

Expression of 1-1-4.2.1.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.81247	0.364
27DAP/17DAP	0.82289	0.475
39DAP/27DAP	1.49663	0.159
41DAP/39DAP	0.66638	0.087
42DAP/41DAP	1.34729	0.681
43DAP/42DAP	0.94823	0.883
47DAP/43DAP	0.73519	0.173
52DAP/47DAP	1.15794	0.794
57DAP/52DAP	1.29002	0.894

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.65067	0.008
17DAP/reference	1.06486	0.442
27DAP/reference	1.04074	0.487
39DAP/reference	1.0496	0.706
41DAP/reference	1.10006	0.073
42DAP/reference	1.39343	0.001
43DAP/reference	1.1019	0.053
47DAP/reference	1.29966	0.003
52DAP/reference	0.80105	0.027
57DAP/reference	1.01336	1

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.33457	0.168
27DAP/17DAP	0.93637	0.648
39DAP/27DAP	0.83202	0.111
41DAP/39DAP	1.16691	0.774
42DAP/41DAP	1.01885	0.91
43DAP/42DAP	0.77981	0.029
47DAP/43DAP	1.0342	0.906
52DAP/47DAP	0.86751	0.378
57DAP/52DAP	1.10592	0.5
57DAP/7DAP	0.87919	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.37991	0.038
17DAP/reference	1.06698	0.102
27DAP/reference	0.95538	0.248
39DAP/reference	0.81039	0.011
41DAP/reference	0.78505	0.037
42DAP/reference	0.81447	0.02
43DAP/reference	0.75317	0.016
47DAP/reference	0.99272	1
52DAP/reference	0.69421	0.035
57DAP/reference	0.59601	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.49902	0.049
17DAP/reference	1.89497	0.017
27DAP/reference	1.16039	0.212
39DAP/reference	0.9878	0.554
41DAP/reference	0.84922	0.087
42DAP/reference	1.19607	0.086
43DAP/reference	1.12481	0.15
47DAP/reference	1.07661	0.353
52DAP/reference	1.07795	0.194
57DAP/reference	0.86895	0.054

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.09042	0.244
17DAP/reference	1.20359	0.253
27DAP/reference	0.97961	0.566
39DAP/reference	0.92923	0.058
41DAP/reference	0.97365	0.512
42DAP/reference	1.35838	0.024
43DAP/reference	1.19726	0.459
47DAP/reference	0.98046	0.525
52DAP/reference	0.91675	0.395
57DAP/reference	0.83246	0.083

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.04262	0.966
26DAP/20DAP	1.09731	0.735
34DAP/26DAP	0.89066	0.795
51DAP/34DAP	0.79425	0.121
52DAP/51DAP	0.94425	1
53DAP/52DAP	0.72594	0.066
55DAP/53DAP	1.05771	0.989
57DAP/55DAP	1.22923	0.745
62DAP/57DAP	1.25852	0.006
68DAP/62DAP	0.66106	0.055
68DAP/14DAP	1.00525	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.30516	0.039

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.25111	0.068
Mature Green Tomato/Ripe Tomato	1.16765	0.632
Immature Eggplant/Mature Eggplant	0.89625	0.329
Ripe Pepper/Ripe Tomato	0.08682	0.224
Mature Eggplant/Ripe Tomato	0.11906	0.234

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.16917	0.742
1-1-2/M82	0.91371	1
12-2/M82	2.54912	1
12-4/M82	0.98397	1
1-3/M82	1.52492	1
2-1-1/M82	1.00235	1
2-1/M82	1.05278	1
2-6/M82	1.19962	0.594
3-2/M82	N/A	N/A
4-1-1/M82	1.11253	1
4-1/M82	1.08266
4-3-2/M82	1.57529	0.284
4-3/M82	1.19069	1
5-3/M82	0.96728	1
6-2/M82	1.13174	1
6-3/M82	0.77893	0.916
7-1/M82	0.97798	0.476
7-2/M82	1.14739	1
9-3-2/M82	0.98431

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.99906	1
IL2-6/WTpooled	1.02072	1
IL7-5/WTpooled	1.36299	0.792
IL7-3/WTpooled	1.1312	1
IL12-4/WTpooled	1.17045	0.839
IL1-4/WTpooled	1.10899	1
WT/WTpooled	0.97873	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.0525	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.05362	0.921
DC3000/delta hrp 6h	0.98561	0.95
DC3000/delta hrp 12h	1.2068	1
DC3000/delta hrp 24h	0.76939	0.069

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.03558	1
DC3000 delta B/DC3000 delta AB	1.00151	1

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.86826	1
Exp 36h	1.10768	1
Exp 60h	1.17095	0.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.979	1
Var 0h	0.80035	1
Var 12h I row2-row1	0.95987	0.948
Var 12h NI row2-row1	1.05005	1
Var 36h I row2-row1	1.28474	0.368
Var 36h NI row2-row1	1	1
Var 60h I row2-row1	1.54521	1
Var 60h NI row2-row1	0.86911	0.818
Time course 0hI-0hNI	0.86616	0.166
Time course 12hI-12hNI	0.93144	0.362
Time course 36hI-36hNI	1.06281	0.651
Time course 60hI-60hNI	0.73258	0.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.16303	0.297
transgenic ySAMdc/azygous control (breaker)	1.2964	0.178
transgenic ySAMdc/azygous control (red)	1.06663	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.03216	0.054

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.04591	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.26963	0.307
Manapal/WT (break)	1.06294	1
Manapal/WT (red)	0.8708	0.424