Expression of 1-1-4.2.10.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94408 | 0.671 |
27DAP/17DAP | 1.0903 | 0.88 |
39DAP/27DAP | 0.9194 | 0.462 |
41DAP/39DAP | 1.16641 | 0.3 |
42DAP/41DAP | 1.03788 | 0.994 |
43DAP/42DAP | 0.96018 | 0.898 |
47DAP/43DAP | 1.05377 | 0.926 |
52DAP/47DAP | 1.7291 | 0.119 |
57DAP/52DAP | 0.92389 | 0.82 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99685 | 0.743 |
17DAP/reference | 0.954 | 0.26 |
27DAP/reference | 1.01347 | 0.806 |
39DAP/reference | 0.97313 | 0.638 |
41DAP/reference | 1.04251 | 0.516 |
42DAP/reference | 1.07319 | 0.02 |
43DAP/reference | 0.99093 | 0.785 |
47DAP/reference | 0.9882 | 0.503 |
52DAP/reference | 1.0309 | 0.607 |
57DAP/reference | 0.93577 | 0.071 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11973 | 0.34 |
27DAP/17DAP | N/A | N/A |
39DAP/27DAP | 1.08558 | 0.553 |
41DAP/39DAP | 0.90345 | 0.512 |
42DAP/41DAP | 1.12584 | 0.067 |
43DAP/42DAP | 1.03287 | 0.83 |
47DAP/43DAP | 0.99714 | 0.99 |
52DAP/47DAP | 0.96693 | 0.913 |
57DAP/52DAP | 0.96643 | 0.632 |
57DAP/7DAP | 1.0643 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94575 | 0.203 |
17DAP/reference | 0.95146 | 0.035 |
27DAP/reference | 0.97865 | 0.264 |
39DAP/reference | 0.94371 | 0.015 |
41DAP/reference | 0.8966 | 0.035 |
42DAP/reference | 0.87996 | 0.012 |
43DAP/reference | 0.94596 | 0.159 |
47DAP/reference | 0.89096 | 0.066 |
52DAP/reference | 0.93943 | 0.254 |
57DAP/reference | 0.89262 | 0.022 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1446 | 0.055 |
17DAP/reference | 1.20298 | 0.026 |
27DAP/reference | 1.08472 | 0.543 |
39DAP/reference | 1.02277 | 1 |
41DAP/reference | 0.90942 | 0.205 |
42DAP/reference | 0.95057 | 0.169 |
43DAP/reference | 1.2151 | 0.047 |
47DAP/reference | 0.94862 | 0.123 |
52DAP/reference | 1.03335 | 0.393 |
57DAP/reference | 1.13824 | 0.296 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98921 | 0.607 |
17DAP/reference | 1.0432 | 0.482 |
27DAP/reference | 0.92092 | 0.065 |
39DAP/reference | 0.96263 | 0.199 |
41DAP/reference | 0.95349 | 0.132 |
42DAP/reference | 0.91891 | 0.22 |
43DAP/reference | 0.9661 | 0.449 |
47DAP/reference | 0.94943 | 0.357 |
52DAP/reference | 0.91623 | 0.228 |
57DAP/reference | 0.72237 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.88168 | 0.787 |
26DAP/20DAP | 0.98774 | 1 |
34DAP/26DAP | 0.96747 | 0.945 |
51DAP/34DAP | 1.04048 | 0.84 |
52DAP/51DAP | 1.00547 | 0.954 |
53DAP/52DAP | 1.0078 | |
55DAP/53DAP | 0.98599 | 0.908 |
57DAP/55DAP | 1.06072 | 0.898 |
62DAP/57DAP | 1.11164 | 0.158 |
68DAP/62DAP | 0.95801 | 0.769 |
68DAP/14DAP | 0.96777 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.15407 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.29029 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.89662 | 0.487 |
Immature Eggplant/Mature Eggplant | 0.53803 | 0.063 |
Ripe Pepper/Ripe Tomato | 2.22839 | 0.256 |
Mature Eggplant/Ripe Tomato | 3.47423 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.081 | 0.877 |
1-1-2/M82 | 0.84447 | 0.804 |
12-2/M82 | 1.18373 | |
12-4/M82 | 0.92629 | 1 |
1-3/M82 | 0.86269 | 0.378 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 1.18405 | |
2-6/M82 | 0.9785 | 1 |
3-2/M82 | 0.97068 | 0.455 |
4-1-1/M82 | 1.08144 | 1 |
4-1/M82 | 0.86722 | 1 |
4-3-2/M82 | 0.97356 | 1 |
4-3/M82 | 1.17519 | |
5-3/M82 | 0.90554 | 1 |
6-2/M82 | 0.96338 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.1252 | 1 |
9-3-2/M82 | 0.97083 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12455 | |
IL2-6/WTpooled | 1.17238 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.0223 | 1 |
IL12-4/WTpooled | 0.86974 | 0.71 |
IL1-4/WTpooled | 1.07361 | 1 |
WT/WTpooled | 0.9508 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15792 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06713 | 0.846 |
DC3000/delta hrp 6h | 1.00844 | 0.95 |
DC3000/delta hrp 12h | 1.01348 | 1 |
DC3000/delta hrp 24h | 1.03892 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.02554 | 0.556 |
DC3000 delta B/DC3000 delta AB | 1.03361 | 0.625 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.63628 | 0.328 |
Exp 36h | 0.60953 | 0.623 |
Exp 60h | 0.39504 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01061 | 1 |
Var 0h | 1.04087 | 0.98 |
Var 12h I row2-row1 | 1.44723 | 0.406 |
Var 12h NI row2-row1 | 1.08745 | 1 |
Var 36h I row2-row1 | 1.06243 | 1 |
Var 36h NI row2-row1 | 0.86976 | 0.584 |
Var 60h I row2-row1 | 1.27455 | 1 |
Var 60h NI row2-row1 | 0.96052 | 1 |
Time course 0hI-0hNI | 1.10125 | 0.719 |
Time course 12hI-12hNI | 1.02637 | 0.82 |
Time course 36hI-36hNI | 0.95662 | 0.255 |
Time course 60hI-60hNI | 1.18011 | 0.115 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.73228 | 0.278 |
transgenic ySAMdc/azygous control (breaker) | 2.52606 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.66444 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02099 | 0.234 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.56629 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.08088 | 0.14 |
Manapal/WT (break) | 0.96516 | 1 |
Manapal/WT (red) | 3.18805 | 0.15 |
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