Expression of 1-1-4.2.10.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.944080.671
27DAP/17DAP1.09030.88
39DAP/27DAP0.91940.462
41DAP/39DAP1.166410.3
42DAP/41DAP1.037880.994
43DAP/42DAP0.960180.898
47DAP/43DAP1.053770.926
52DAP/47DAP1.72910.119
57DAP/52DAP0.923890.82

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.996850.743
17DAP/reference0.9540.26
27DAP/reference1.013470.806
39DAP/reference0.973130.638
41DAP/reference1.042510.516
42DAP/reference1.073190.02
43DAP/reference0.990930.785
47DAP/reference0.98820.503
52DAP/reference1.03090.607
57DAP/reference0.935770.071

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.119730.34
27DAP/17DAPN/AN/A
39DAP/27DAP1.085580.553
41DAP/39DAP0.903450.512
42DAP/41DAP1.125840.067
43DAP/42DAP1.032870.83
47DAP/43DAP0.997140.99
52DAP/47DAP0.966930.913
57DAP/52DAP0.966430.632
57DAP/7DAP1.06431

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.945750.203
17DAP/reference0.951460.035
27DAP/reference0.978650.264
39DAP/reference0.943710.015
41DAP/reference0.89660.035
42DAP/reference0.879960.012
43DAP/reference0.945960.159
47DAP/reference0.890960.066
52DAP/reference0.939430.254
57DAP/reference0.892620.022

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.14460.055
17DAP/reference1.202980.026
27DAP/reference1.084720.543
39DAP/reference1.022771
41DAP/reference0.909420.205
42DAP/reference0.950570.169
43DAP/reference1.21510.047
47DAP/reference0.948620.123
52DAP/reference1.033350.393
57DAP/reference1.138240.296

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.989210.607
17DAP/reference1.04320.482
27DAP/reference0.920920.065
39DAP/reference0.962630.199
41DAP/reference0.953490.132
42DAP/reference0.918910.22
43DAP/reference0.96610.449
47DAP/reference0.949430.357
52DAP/reference0.916230.228
57DAP/reference0.722370.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.881680.787
26DAP/20DAP0.987741
34DAP/26DAP0.967470.945
51DAP/34DAP1.040480.84
52DAP/51DAP1.005470.954
53DAP/52DAP1.0078
55DAP/53DAP0.985990.908
57DAP/55DAP1.060720.898
62DAP/57DAP1.111640.158
68DAP/62DAP0.958010.769
68DAP/14DAP0.967771

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.154070.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.290290.058
Mature Green Tomato/Ripe Tomato0.896620.487
Immature Eggplant/Mature Eggplant0.538030.063
Ripe Pepper/Ripe Tomato2.228390.256
Mature Eggplant/Ripe Tomato3.474230.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.0810.877
1-1-2/M820.844470.804
12-2/M821.18373
12-4/M820.926291
1-3/M820.862690.378
2-1-1/M82N/AN/A
2-1/M821.18405
2-6/M820.97851
3-2/M820.970680.455
4-1-1/M821.081441
4-1/M820.867221
4-3-2/M820.973561
4-3/M821.17519
5-3/M820.905541
6-2/M820.96338
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.12521
9-3-2/M820.970831

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.12455
IL2-6/WTpooled1.172380.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.02231
IL12-4/WTpooled0.869740.71
IL1-4/WTpooled1.073611
WT/WTpooled0.95081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.157920.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.067130.846
DC3000/delta hrp 6h1.008440.95
DC3000/delta hrp 12h1.013481
DC3000/delta hrp 24h1.038920.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.025540.556
DC3000 delta B/DC3000 delta AB1.033610.625

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.636280.328
Exp 36h0.609530.623
Exp 60h0.395040.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010611
Var 0h1.040870.98
Var 12h I row2-row11.447230.406
Var 12h NI row2-row11.087451
Var 36h I row2-row11.062431
Var 36h NI row2-row10.869760.584
Var 60h I row2-row11.274551
Var 60h NI row2-row10.960521
Time course 0hI-0hNI1.101250.719
Time course 12hI-12hNI1.026370.82
Time course 36hI-36hNI0.956620.255
Time course 60hI-60hNI1.180110.115

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.732280.278
transgenic ySAMdc/azygous control (breaker)2.526060.178
transgenic ySAMdc/azygous control (red)1.664440.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.020990.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.566290.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.080880.14
Manapal/WT (break)0.965161
Manapal/WT (red)3.188050.15