Expression of 1-1-4.2.10.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.950520.689
27DAP/17DAP1.190210.808
39DAP/27DAP1.143520.907
41DAP/39DAP1.010980.994
42DAP/41DAP1.054640.967
43DAP/42DAP0.866710.77
47DAP/43DAP1.025040.999
52DAP/47DAP1.391880.509
57DAP/52DAP0.798720.759

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.03090.9
17DAP/reference0.967380.448
27DAP/reference1.068770.498
39DAP/reference1.239240.413
41DAP/reference0.946420.341
42DAP/reference1.001090.587
43DAP/reference1.012910.812
47DAP/reference1.035590.773
52DAP/reference1.237150.088
57DAP/reference1.179150.03

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.828550.194
27DAP/17DAP0.926420.821
39DAP/27DAP1.153630.636
41DAP/39DAP1.095070.827
42DAP/41DAP0.940530.612
43DAP/42DAP0.993220.991
47DAP/43DAP1.312980.154
52DAP/47DAP1.108550.639
57DAP/52DAP1.054010.997
57DAP/7DAP1.273780.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.075150.545
17DAP/reference1.251990.627
27DAP/reference1.247010.014
39DAP/reference1.39480.015
41DAP/reference1.314820.017
42DAP/reference1.41160.006
43DAP/reference1.292330.008
47DAP/reference1.177470.121
52DAP/reference1.37560.052
57DAP/reference1.210440.087

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.020980.951
17DAP/reference1.013240.83
27DAP/reference1.091680.583
39DAP/reference0.907650.359
41DAP/reference1.057871
42DAP/reference1.083421
43DAP/reference1.318520.069
47DAP/reference1.183590.164
52DAP/reference0.979410.5
57DAP/reference0.809520.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968670.526
17DAP/reference1.125420.585
27DAP/reference1.242290.081
39DAP/reference1.214620.022
41DAP/reference1.213750.296
42DAP/reference1.099790.759
43DAP/reference1.4290.019
47DAP/reference1.009091
52DAP/reference1.165830.278
57DAP/reference1.436130.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.012051
26DAP/20DAP1.130971
34DAP/26DAP1.111271
51DAP/34DAP1.213780.081
52DAP/51DAP0.811261
53DAP/52DAP2.150380.029
55DAP/53DAP0.966010.735
57DAP/55DAP1.08551
62DAP/57DAP0.764320.088
68DAP/62DAP1.189260.788
68DAP/14DAP1.088680.936

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.660970.042

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.723280.197
Mature Green Tomato/Ripe Tomato1.162790.66
Immature Eggplant/Mature Eggplant1.884270.05
Ripe Pepper/Ripe Tomato0.909050.224
Mature Eggplant/Ripe Tomato0.541970.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.14643
1-1-2/M820.98583
12-2/M821.14287
12-4/M821.03206
1-3/M821.05393
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.92721
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.151371
5-3/M821.074751
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.02174
7-2/M821.048671
9-3-2/M820.86684

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.018331
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.017151
IL12-4/WTpooled0.921361
IL1-4/WTpooled0.867280.562
WT/WTpooled1.101721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.272010.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.079740.774
DC3000/delta hrp 6h0.983160.95
DC3000/delta hrp 12h1.046251
DC3000/delta hrp 24h1.184640.182

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.71774
DC3000 delta B/DC3000 delta AB0.951050.543

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.132510.254
Exp 36h1.231461
Exp 60h1.410690.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002611
Var 0h1.232071
Var 12h I row2-row11.040690.736
Var 12h NI row2-row11.322750.649
Var 36h I row2-row10.958731
Var 36h NI row2-row10.864720.706
Var 60h I row2-row10.834440.287
Var 60h NI row2-row10.780860.756
Time course 0hI-0hNI1.115140.603
Time course 12hI-12hNI1.468580.005
Time course 36hI-36hNI1.993950.005
Time course 60hI-60hNI2.349030.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.957890.454
transgenic ySAMdc/azygous control (breaker)0.968961
transgenic ySAMdc/azygous control (red)0.90941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.970640.136

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.682530.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.054971
Manapal/WT (break)0.799070.333
Manapal/WT (red)0.656190.181