Expression of 1-1-4.2.10.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04227 | 0.847 |
27DAP/17DAP | 1.10471 | 0.849 |
39DAP/27DAP | 1.23034 | 0.906 |
41DAP/39DAP | 0.82364 | 0.373 |
42DAP/41DAP | 1.08651 | 0.916 |
43DAP/42DAP | 0.76682 | 0.686 |
47DAP/43DAP | 1.44333 | 0.481 |
52DAP/47DAP | 1.06442 | 0.906 |
57DAP/52DAP | 1.00709 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93885 | 0.3 |
17DAP/reference | 0.87336 | 0.097 |
27DAP/reference | 1.00019 | 0.923 |
39DAP/reference | 1.06077 | 0.359 |
41DAP/reference | 0.90837 | 0.154 |
42DAP/reference | 0.91991 | 0.129 |
43DAP/reference | 0.93514 | 0.377 |
47DAP/reference | 0.9382 | 0.161 |
52DAP/reference | 1.13775 | 0.079 |
57DAP/reference | 1.17883 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19669 | 0.5 |
27DAP/17DAP | 1.14186 | 0.942 |
39DAP/27DAP | 1.0989 | 0.581 |
41DAP/39DAP | 1.02744 | 0.896 |
42DAP/41DAP | 1.25987 | 0.559 |
43DAP/42DAP | 0.9799 | 0.854 |
47DAP/43DAP | 0.88672 | 0.516 |
52DAP/47DAP | 0.98501 | 0.93 |
57DAP/52DAP | 0.93204 | 0.603 |
57DAP/7DAP | 0.83767 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85678 | 0.095 |
17DAP/reference | 1.07256 | 0.688 |
27DAP/reference | 1.09805 | 0.246 |
39DAP/reference | 0.96285 | 0.411 |
41DAP/reference | 1.06423 | 0.524 |
42DAP/reference | 0.87036 | 0.136 |
43DAP/reference | 1.41495 | 0.074 |
47DAP/reference | 1.07511 | 0.791 |
52DAP/reference | 0.84422 | 0.077 |
57DAP/reference | 0.9667 | 0.426 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84205 | 0.124 |
17DAP/reference | 0.79807 | 0.024 |
27DAP/reference | 0.98731 | 0.598 |
39DAP/reference | 0.96367 | 0.416 |
41DAP/reference | 0.96627 | 0.412 |
42DAP/reference | 1.04939 | 0.509 |
43DAP/reference | 1.22895 | 0.288 |
47DAP/reference | 0.9994 | 0.77 |
52DAP/reference | 0.93224 | 0.131 |
57DAP/reference | 0.89169 | 0.243 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98275 | 0.653 |
17DAP/reference | 1.1403 | 0.572 |
27DAP/reference | 1.4019 | 0.216 |
39DAP/reference | 1.02417 | 0.912 |
41DAP/reference | 1.05698 | 0.57 |
42DAP/reference | 0.88727 | 0.445 |
43DAP/reference | 0.98507 | 0.66 |
47DAP/reference | 0.89332 | 0.066 |
52DAP/reference | 0.89176 | 0.284 |
57DAP/reference | 1.14285 | 0.171 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.29837 | 0.878 |
26DAP/20DAP | 1.12622 | 0.683 |
34DAP/26DAP | 0.98224 | 1 |
51DAP/34DAP | 0.97139 | 0.835 |
52DAP/51DAP | 0.92092 | 1 |
53DAP/52DAP | 1.49528 | 0.58 |
55DAP/53DAP | 1.0556 | 0.964 |
57DAP/55DAP | 1.12845 | 0.927 |
62DAP/57DAP | 1.02194 | 0.935 |
68DAP/62DAP | 1.25751 | 0.533 |
68DAP/14DAP | 2.02167 | 0.048 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02657 | 0.814 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.95429 | 0.692 |
Mature Green Tomato/Ripe Tomato | 1.37143 | 0.299 |
Immature Eggplant/Mature Eggplant | 0.99066 | 1 |
Ripe Pepper/Ripe Tomato | 1.24469 | 1 |
Mature Eggplant/Ripe Tomato | 1.28425 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1484 | 0.526 |
1-1-2/M82 | 0.89622 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.06612 | 1 |
1-3/M82 | 0.61243 | |
2-1-1/M82 | 1.16812 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.91652 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.31485 | |
4-3-2/M82 | 1.13834 | |
4-3/M82 | 0.99888 | |
5-3/M82 | 0.91891 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.82739 | 0.57 |
9-3-2/M82 | 0.98922 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.54256 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02782 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0926 | 0.823 |
DC3000/delta hrp 6h | 1.05778 | 1 |
DC3000/delta hrp 12h | 0.95487 | 1 |
DC3000/delta hrp 24h | 1.10349 | 0.322 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97745 | 1 |
Exp 36h | 1.03199 | 1 |
Exp 60h | 1.10825 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01517 | 1 |
Var 0h | 1.09433 | 0.98 |
Var 12h I row2-row1 | 1.03555 | 0.736 |
Var 12h NI row2-row1 | 0.96405 | 0.713 |
Var 36h I row2-row1 | 1.29566 | 0.489 |
Var 36h NI row2-row1 | 0.94327 | 0.743 |
Var 60h I row2-row1 | 0.97546 | 1 |
Var 60h NI row2-row1 | 0.80122 | 0.866 |
Time course 0hI-0hNI | 0.93135 | 0.519 |
Time course 12hI-12hNI | 1.01669 | 0.861 |
Time course 36hI-36hNI | 1.28022 | 0.007 |
Time course 60hI-60hNI | 1.63181 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99398 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.79122 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.96674 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98285 | 0.393 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.84131 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98843 | 1 |
Manapal/WT (break) | 0.8803 | 0.333 |
Manapal/WT (red) | 0.93192 | 0.607 |
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