Expression of 1-1-4.2.10.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.042270.847
27DAP/17DAP1.104710.849
39DAP/27DAP1.230340.906
41DAP/39DAP0.823640.373
42DAP/41DAP1.086510.916
43DAP/42DAP0.766820.686
47DAP/43DAP1.443330.481
52DAP/47DAP1.064420.906
57DAP/52DAP1.007090.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.938850.3
17DAP/reference0.873360.097
27DAP/reference1.000190.923
39DAP/reference1.060770.359
41DAP/reference0.908370.154
42DAP/reference0.919910.129
43DAP/reference0.935140.377
47DAP/reference0.93820.161
52DAP/reference1.137750.079
57DAP/reference1.178830.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.196690.5
27DAP/17DAP1.141860.942
39DAP/27DAP1.09890.581
41DAP/39DAP1.027440.896
42DAP/41DAP1.259870.559
43DAP/42DAP0.97990.854
47DAP/43DAP0.886720.516
52DAP/47DAP0.985010.93
57DAP/52DAP0.932040.603
57DAP/7DAP0.837671

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.856780.095
17DAP/reference1.072560.688
27DAP/reference1.098050.246
39DAP/reference0.962850.411
41DAP/reference1.064230.524
42DAP/reference0.870360.136
43DAP/reference1.414950.074
47DAP/reference1.075110.791
52DAP/reference0.844220.077
57DAP/reference0.96670.426

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.842050.124
17DAP/reference0.798070.024
27DAP/reference0.987310.598
39DAP/reference0.963670.416
41DAP/reference0.966270.412
42DAP/reference1.049390.509
43DAP/reference1.228950.288
47DAP/reference0.99940.77
52DAP/reference0.932240.131
57DAP/reference0.891690.243

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.982750.653
17DAP/reference1.14030.572
27DAP/reference1.40190.216
39DAP/reference1.024170.912
41DAP/reference1.056980.57
42DAP/reference0.887270.445
43DAP/reference0.985070.66
47DAP/reference0.893320.066
52DAP/reference0.891760.284
57DAP/reference1.142850.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.298370.878
26DAP/20DAP1.126220.683
34DAP/26DAP0.982241
51DAP/34DAP0.971390.835
52DAP/51DAP0.920921
53DAP/52DAP1.495280.58
55DAP/53DAP1.05560.964
57DAP/55DAP1.128450.927
62DAP/57DAP1.021940.935
68DAP/62DAP1.257510.533
68DAP/14DAP2.021670.048

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.026570.814

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.954290.692
Mature Green Tomato/Ripe Tomato1.371430.299
Immature Eggplant/Mature Eggplant0.990661
Ripe Pepper/Ripe Tomato1.244691
Mature Eggplant/Ripe Tomato1.284250.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.14840.526
1-1-2/M820.89622
12-2/M82N/AN/A
12-4/M821.066121
1-3/M820.61243
2-1-1/M821.168121
2-1/M82N/AN/A
2-6/M820.916521
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.31485
4-3-2/M821.13834
4-3/M820.99888
5-3/M820.918910.642
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.827390.57
9-3-2/M820.98922

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.54256
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.027821

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.09260.823
DC3000/delta hrp 6h1.057781
DC3000/delta hrp 12h0.954871
DC3000/delta hrp 24h1.103490.322

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.977451
Exp 36h1.031991
Exp 60h1.108251

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.015171
Var 0h1.094330.98
Var 12h I row2-row11.035550.736
Var 12h NI row2-row10.964050.713
Var 36h I row2-row11.295660.489
Var 36h NI row2-row10.943270.743
Var 60h I row2-row10.975461
Var 60h NI row2-row10.801220.866
Time course 0hI-0hNI0.931350.519
Time course 12hI-12hNI1.016690.861
Time course 36hI-36hNI1.280220.007
Time course 60hI-60hNI1.631810.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.993980.862
transgenic ySAMdc/azygous control (breaker)0.791220.15
transgenic ySAMdc/azygous control (red)0.966741

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.982850.393

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.841310.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.988431
Manapal/WT (break)0.88030.333
Manapal/WT (red)0.931920.607