Expression of 1-1-4.2.10.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95542 | 0.699 |
27DAP/17DAP | 0.87954 | 0.7 |
39DAP/27DAP | 0.88485 | 0.573 |
41DAP/39DAP | 1.04782 | 0.938 |
42DAP/41DAP | 1.11748 | 0.931 |
43DAP/42DAP | 0.84498 | 0.709 |
47DAP/43DAP | 1.07619 | 0.926 |
52DAP/47DAP | 0.84314 | 0.557 |
57DAP/52DAP | 1.1487 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01883 | 1 |
17DAP/reference | 0.96914 | 0.664 |
27DAP/reference | 0.95449 | 0.428 |
39DAP/reference | 1.20044 | 0.162 |
41DAP/reference | 1.06817 | 0.102 |
42DAP/reference | 1.09829 | 0.191 |
43DAP/reference | 1.00517 | 0.924 |
47DAP/reference | 1.13698 | 0.167 |
52DAP/reference | 1.03569 | 1 |
57DAP/reference | 1.27021 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.50804 | 0.036 |
27DAP/17DAP | 0.84632 | 0.241 |
39DAP/27DAP | 0.45582 | 0.031 |
41DAP/39DAP | 1.34546 | 0.077 |
42DAP/41DAP | 0.85715 | 0.034 |
43DAP/42DAP | 0.73445 | 0.029 |
47DAP/43DAP | 1.18855 | 0.133 |
52DAP/47DAP | 0.69079 | 0.042 |
57DAP/52DAP | 0.94881 | 0.646 |
57DAP/7DAP | 0.31505 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01933 | 1 |
17DAP/reference | 1.21797 | 0.013 |
27DAP/reference | 1.06143 | 0.371 |
39DAP/reference | 1.10377 | 0.073 |
41DAP/reference | 1.28414 | 0.077 |
42DAP/reference | 1.39032 | 0.059 |
43DAP/reference | 1.08643 | 0.432 |
47DAP/reference | 1.16985 | 0.247 |
52DAP/reference | 0.98375 | 0.571 |
57DAP/reference | 0.94952 | 0.28 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22732 | 0.072 |
17DAP/reference | 1.19078 | 0.03 |
27DAP/reference | 0.9107 | 0.292 |
39DAP/reference | 0.91479 | 0.25 |
41DAP/reference | 1.02762 | 1 |
42DAP/reference | 1.19006 | 0.281 |
43DAP/reference | 1.32823 | 0.086 |
47DAP/reference | 1.39771 | 0.017 |
52DAP/reference | 1.08314 | 0.528 |
57DAP/reference | 0.96165 | 0.408 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99501 | 0.699 |
17DAP/reference | 1.2081 | 0.111 |
27DAP/reference | 1.19892 | 0.096 |
39DAP/reference | 1.12583 | 0.017 |
41DAP/reference | 1.01796 | 1 |
42DAP/reference | 1.07388 | 0.416 |
43DAP/reference | 0.95687 | 0.523 |
47DAP/reference | 1.1127 | 0.187 |
52DAP/reference | 1.12505 | 0.509 |
57DAP/reference | 1.17008 | 0.316 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0491 | 0.966 |
26DAP/20DAP | 0.94774 | 1 |
34DAP/26DAP | 0.96144 | 0.936 |
51DAP/34DAP | 1.0147 | 0.924 |
52DAP/51DAP | 1.10733 | 0.616 |
53DAP/52DAP | 0.59884 | 0.455 |
55DAP/53DAP | 1.10826 | 1 |
57DAP/55DAP | 0.9263 | 0.623 |
62DAP/57DAP | 1.25658 | 0.833 |
68DAP/62DAP | 1.13287 | 0.919 |
68DAP/14DAP | 0.76617 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.96496 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.7609 | 0.238 |
Mature Green Tomato/Ripe Tomato | 1.11324 | 0.611 |
Immature Eggplant/Mature Eggplant | 0.98473 | 1 |
Ripe Pepper/Ripe Tomato | 1.19641 | 1 |
Mature Eggplant/Ripe Tomato | 1.17669 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03451 | 1 |
1-1-2/M82 | 1.09217 | 1 |
12-2/M82 | 1.08192 | |
12-4/M82 | 0.90325 | 0.619 |
1-3/M82 | 0.71277 | |
2-1-1/M82 | 0.98935 | 1 |
2-1/M82 | 0.82068 | |
2-6/M82 | 0.95098 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.79124 | |
4-1/M82 | 1.22702 | |
4-3-2/M82 | 1.16723 | 0.508 |
4-3/M82 | 1.22546 | 1 |
5-3/M82 | 1.04487 | 1 |
6-2/M82 | 0.71697 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.00366 | |
7-2/M82 | 0.85689 | 0.527 |
9-3-2/M82 | 1.49197 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.14305 | 0.493 |
IL2-6/WTpooled | 2.21164 | 0.395 |
IL7-5/WTpooled | 1.0489 | |
IL7-3/WTpooled | 0.24021 | 0.283 |
IL12-4/WTpooled | 1.14771 | 0.839 |
IL1-4/WTpooled | 1.0694 | 1 |
WT/WTpooled | 0.82704 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.13173 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00486 | 1 |
DC3000/delta hrp 6h | 0.68872 | 0.861 |
DC3000/delta hrp 12h | 1.01646 | 1 |
DC3000/delta hrp 24h | 0.76801 | 0.065 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.56786 | 0.026 |
DC3000 delta B/DC3000 delta AB | 0.55063 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.8749 | 0.24 |
Exp 36h | 0.75985 | 0.504 |
Exp 60h | 0.69059 | 0.32 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9685 | 1 |
Var 0h | 1.18645 | 0.782 |
Var 12h I row2-row1 | 0.7208 | 0.353 |
Var 12h NI row2-row1 | 1.04888 | 1 |
Var 36h I row2-row1 | 0.98772 | 1 |
Var 36h NI row2-row1 | 1.20736 | 1 |
Var 60h I row2-row1 | 1.10697 | 1 |
Var 60h NI row2-row1 | 1.0677 | 1 |
Time course 0hI-0hNI | 0.96115 | 0.808 |
Time course 12hI-12hNI | 0.94877 | 0.612 |
Time course 36hI-36hNI | 0.97226 | 0.468 |
Time course 60hI-60hNI | 0.47017 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03798 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 1.04456 | 1 |
transgenic ySAMdc/azygous control (red) | 1.06375 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00586 | 0.766 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.80738 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02346 | 1 |
Manapal/WT (break) | 0.97954 | 1 |
Manapal/WT (red) | 0.97415 | 0.728 |
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