Expression of 1-1-4.2.10.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.44470.076
27DAP/17DAP1.779970.479
39DAP/27DAP1.699810.187
41DAP/39DAP0.911080.636
42DAP/41DAP1.627680.466
43DAP/42DAP0.799450.467
47DAP/43DAP1.000820.934
52DAP/47DAP0.741620.32
57DAP/52DAP0.953310.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.04170.814
17DAP/reference1.10710.427
27DAP/reference1.175040.179
39DAP/reference1.166160.051
41DAP/reference0.908420.085
42DAP/reference1.031250.656
43DAP/reference1.074480.73
47DAP/reference1.279730.002
52DAP/reference1.216310.043
57DAP/reference1.210950.063

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.188890.326
27DAP/17DAP1.091230.754
39DAP/27DAP1.303460.224
41DAP/39DAP1.329390.393
42DAP/41DAP0.939310.61
43DAP/42DAP0.827230.079
47DAP/43DAP1.149480.344
52DAP/47DAP0.87350.366
57DAP/52DAP0.991340.841
57DAP/7DAP1.330640.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.346620.078
17DAP/reference1.25360.007
27DAP/reference1.321480.01
39DAP/reference1.160370.025
41DAP/reference1.197470.077
42DAP/reference1.209780.021
43DAP/reference1.288490.011
47DAP/reference1.378330.07
52DAP/reference1.47990.007
57DAP/reference1.428760.02

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.95160.592
17DAP/reference0.921790.07
27DAP/reference0.858550.249
39DAP/reference1.113420.62
41DAP/reference1.030921
42DAP/reference0.908410.212
43DAP/reference1.194810.929
47DAP/reference1.417310.036
52DAP/reference0.951540.239
57DAP/reference1.29810.062

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.288130.051
17DAP/reference1.01510.9
27DAP/reference1.141380.131
39DAP/reference1.291630.05
41DAP/reference1.165320.134
42DAP/reference1.422720.01
43DAP/reference1.209870.128
47DAP/reference1.191380.104
52DAP/reference1.385620.116
57DAP/reference1.195730.157

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.901910.997
26DAP/20DAP0.933031
34DAP/26DAP0.852430.272
51DAP/34DAP1.870530.033
52DAP/51DAP0.884981
53DAP/52DAP1.058890.935
55DAP/53DAP0.77610.088
57DAP/55DAP1.591930.222
62DAP/57DAP1.590180.445
68DAP/62DAP1.049481
68DAP/14DAP1.19690.694

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.317520.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.331040.077
Mature Green Tomato/Ripe Tomato0.944390.715
Immature Eggplant/Mature Eggplant1.664330.05
Ripe Pepper/Ripe Tomato1.475580.256
Mature Eggplant/Ripe Tomato0.575141

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.265890.574
1-1-2/M821.464581
12-2/M820.98525
12-4/M820.844240.319
1-3/M822.31454
2-1-1/M82N/AN/A
2-1/M821.17117
2-6/M821.145290.505
3-2/M821.32303
4-1-1/M821.35872
4-1/M820.74536
4-3-2/M821.361510.284
4-3/M821.806850.268
5-3/M821.213020.572
6-2/M822.25896
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.535331

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.195350.365
IL2-6/WTpooled0.663620.348
IL7-5/WTpooled0.917961
IL7-3/WTpooled1.227210.362
IL12-4/WTpooled1.099810.646
IL1-4/WTpooled0.98071
WT/WTpooled1.023651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.201151

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.97299
DC3000/delta hrp 6h1.066571
DC3000/delta hrp 12h1.184641
DC3000/delta hrp 24h0.932460.585

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.424510.043
DC3000 delta B/DC3000 delta AB1.310190.17

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.183470.196
Exp 36h1.643360.326
Exp 60h2.109710.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.055741
Var 0h0.980271
Var 12h I row2-row11.180830.224
Var 12h NI row2-row11.357520.34
Var 36h I row2-row11.266680.304
Var 36h NI row2-row10.820380.61
Var 60h I row2-row10.69690.306
Var 60h NI row2-row10.847020.431
Time course 0hI-0hNI1.112040.344
Time course 12hI-12hNI1.61130.005
Time course 36hI-36hNI2.871590.004
Time course 60hI-60hNI7.369870.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.948130.348
transgenic ySAMdc/azygous control (breaker)0.955831
transgenic ySAMdc/azygous control (red)0.908881

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.104570.119

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.781580.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.113661
Manapal/WT (break)0.799660.333
Manapal/WT (red)0.735090.187