Expression of 1-1-4.2.10.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.4447 | 0.076 |
27DAP/17DAP | 1.77997 | 0.479 |
39DAP/27DAP | 1.69981 | 0.187 |
41DAP/39DAP | 0.91108 | 0.636 |
42DAP/41DAP | 1.62768 | 0.466 |
43DAP/42DAP | 0.79945 | 0.467 |
47DAP/43DAP | 1.00082 | 0.934 |
52DAP/47DAP | 0.74162 | 0.32 |
57DAP/52DAP | 0.95331 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0417 | 0.814 |
17DAP/reference | 1.1071 | 0.427 |
27DAP/reference | 1.17504 | 0.179 |
39DAP/reference | 1.16616 | 0.051 |
41DAP/reference | 0.90842 | 0.085 |
42DAP/reference | 1.03125 | 0.656 |
43DAP/reference | 1.07448 | 0.73 |
47DAP/reference | 1.27973 | 0.002 |
52DAP/reference | 1.21631 | 0.043 |
57DAP/reference | 1.21095 | 0.063 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18889 | 0.326 |
27DAP/17DAP | 1.09123 | 0.754 |
39DAP/27DAP | 1.30346 | 0.224 |
41DAP/39DAP | 1.32939 | 0.393 |
42DAP/41DAP | 0.93931 | 0.61 |
43DAP/42DAP | 0.82723 | 0.079 |
47DAP/43DAP | 1.14948 | 0.344 |
52DAP/47DAP | 0.8735 | 0.366 |
57DAP/52DAP | 0.99134 | 0.841 |
57DAP/7DAP | 1.33064 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34662 | 0.078 |
17DAP/reference | 1.2536 | 0.007 |
27DAP/reference | 1.32148 | 0.01 |
39DAP/reference | 1.16037 | 0.025 |
41DAP/reference | 1.19747 | 0.077 |
42DAP/reference | 1.20978 | 0.021 |
43DAP/reference | 1.28849 | 0.011 |
47DAP/reference | 1.37833 | 0.07 |
52DAP/reference | 1.4799 | 0.007 |
57DAP/reference | 1.42876 | 0.02 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9516 | 0.592 |
17DAP/reference | 0.92179 | 0.07 |
27DAP/reference | 0.85855 | 0.249 |
39DAP/reference | 1.11342 | 0.62 |
41DAP/reference | 1.03092 | 1 |
42DAP/reference | 0.90841 | 0.212 |
43DAP/reference | 1.19481 | 0.929 |
47DAP/reference | 1.41731 | 0.036 |
52DAP/reference | 0.95154 | 0.239 |
57DAP/reference | 1.2981 | 0.062 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28813 | 0.051 |
17DAP/reference | 1.0151 | 0.9 |
27DAP/reference | 1.14138 | 0.131 |
39DAP/reference | 1.29163 | 0.05 |
41DAP/reference | 1.16532 | 0.134 |
42DAP/reference | 1.42272 | 0.01 |
43DAP/reference | 1.20987 | 0.128 |
47DAP/reference | 1.19138 | 0.104 |
52DAP/reference | 1.38562 | 0.116 |
57DAP/reference | 1.19573 | 0.157 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90191 | 0.997 |
26DAP/20DAP | 0.93303 | 1 |
34DAP/26DAP | 0.85243 | 0.272 |
51DAP/34DAP | 1.87053 | 0.033 |
52DAP/51DAP | 0.88498 | 1 |
53DAP/52DAP | 1.05889 | 0.935 |
55DAP/53DAP | 0.7761 | 0.088 |
57DAP/55DAP | 1.59193 | 0.222 |
62DAP/57DAP | 1.59018 | 0.445 |
68DAP/62DAP | 1.04948 | 1 |
68DAP/14DAP | 1.1969 | 0.694 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.31752 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.33104 | 0.077 |
Mature Green Tomato/Ripe Tomato | 0.94439 | 0.715 |
Immature Eggplant/Mature Eggplant | 1.66433 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.47558 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.57514 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.26589 | 0.574 |
1-1-2/M82 | 1.46458 | 1 |
12-2/M82 | 0.98525 | |
12-4/M82 | 0.84424 | 0.319 |
1-3/M82 | 2.31454 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 1.17117 | |
2-6/M82 | 1.14529 | 0.505 |
3-2/M82 | 1.32303 | |
4-1-1/M82 | 1.35872 | |
4-1/M82 | 0.74536 | |
4-3-2/M82 | 1.36151 | 0.284 |
4-3/M82 | 1.80685 | 0.268 |
5-3/M82 | 1.21302 | 0.572 |
6-2/M82 | 2.25896 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.53533 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.19535 | 0.365 |
IL2-6/WTpooled | 0.66362 | 0.348 |
IL7-5/WTpooled | 0.91796 | 1 |
IL7-3/WTpooled | 1.22721 | 0.362 |
IL12-4/WTpooled | 1.09981 | 0.646 |
IL1-4/WTpooled | 0.9807 | 1 |
WT/WTpooled | 1.02365 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.20115 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97299 | |
DC3000/delta hrp 6h | 1.06657 | 1 |
DC3000/delta hrp 12h | 1.18464 | 1 |
DC3000/delta hrp 24h | 0.93246 | 0.585 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.42451 | 0.043 |
DC3000 delta B/DC3000 delta AB | 1.31019 | 0.17 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.18347 | 0.196 |
Exp 36h | 1.64336 | 0.326 |
Exp 60h | 2.10971 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05574 | 1 |
Var 0h | 0.98027 | 1 |
Var 12h I row2-row1 | 1.18083 | 0.224 |
Var 12h NI row2-row1 | 1.35752 | 0.34 |
Var 36h I row2-row1 | 1.26668 | 0.304 |
Var 36h NI row2-row1 | 0.82038 | 0.61 |
Var 60h I row2-row1 | 0.6969 | 0.306 |
Var 60h NI row2-row1 | 0.84702 | 0.431 |
Time course 0hI-0hNI | 1.11204 | 0.344 |
Time course 12hI-12hNI | 1.6113 | 0.005 |
Time course 36hI-36hNI | 2.87159 | 0.004 |
Time course 60hI-60hNI | 7.36987 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94813 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.95583 | 1 |
transgenic ySAMdc/azygous control (red) | 0.90888 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.10457 | 0.119 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.78158 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.11366 | 1 |
Manapal/WT (break) | 0.79966 | 0.333 |
Manapal/WT (red) | 0.73509 | 0.187 |
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