Expression of 1-1-4.2.12.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.869090.486
27DAP/17DAP0.909310.81
39DAP/27DAP1.248580.53
41DAP/39DAP0.779090.208
42DAP/41DAP1.117980.931
43DAP/42DAP1.028661
47DAP/43DAP1.161220.285
52DAP/47DAP1.422780.3
57DAP/52DAP1.360380.837

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.11350.846
17DAP/reference1.163210.384
27DAP/reference0.964590.595
39DAP/reference1.155790.343
41DAP/reference1.086960.552
42DAP/reference1.222980.003
43DAP/reference1.220750.403
47DAP/reference1.216550.136
52DAP/reference1.265630.056
57DAP/reference1.253810.127

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.63325
27DAP/17DAP1.71466
39DAP/27DAP0.97086
41DAP/39DAP1.63133
42DAP/41DAP1.354660.81
43DAP/42DAPN/AN/A
47DAP/43DAP0.971380.87
52DAP/47DAP0.45718
57DAP/52DAP0.798420.665
57DAP/7DAP2.31437

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.878750.115
17DAP/reference1.027311
27DAP/reference1.01971
39DAP/reference0.831230.064
41DAP/reference0.8150.046
42DAP/reference0.749960.021
43DAP/reference0.704390.013
47DAP/reference1.089990.965
52DAP/reference0.846270.15
57DAP/reference0.842650.057

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.764150.17
17DAP/reference1.046650.176
27DAP/reference0.903580.34
39DAP/reference1.229970.263
41DAP/reference1.294360.149
42DAP/reference1.046150.73
43DAP/reference1.226150.109
47DAP/reference1.248240.148
52DAP/reference1.021551
57DAP/reference0.842390.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.929410.335
17DAP/reference1.084120.602
27DAP/reference0.990230.691
39DAP/reference0.870250.133
41DAP/reference1.0230.961
42DAP/reference1.115050.55
43DAP/reference1.141190.734
47DAP/reference1.065230.901
52DAP/reference0.97270.675
57DAP/reference1.067110.991

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.581830.611
26DAP/20DAPN/AN/A
34DAP/26DAP0.60365
51DAP/34DAP1.19590.73
52DAP/51DAP0.68178
53DAP/52DAP1.480840.057
55DAP/53DAP0.961170.807
57DAP/55DAPN/AN/A
62DAP/57DAP1.15530.902
68DAP/62DAP1.11770.919
68DAP/14DAP0.99662

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.357310.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.696290.045
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.41657
Mature Eggplant/Ripe Tomato0.49354

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.10079
12-2/M82N/AN/A
12-4/M821.202210.694
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.48869
4-3-2/M821.252570.508
4-3/M821.285311
5-3/M821.048810.572
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.89171
7-2/M82N/AN/A
9-3-2/M821.304571

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.24018
IL2-6/WTpooled0.991911
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.019971
IL12-4/WTpooled0.996371
IL1-4/WTpooled0.969890.402
WT/WTpooled1.004481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.937491
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.05479
DC3000/delta hrp 24h0.870620.269

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.156050.259
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.271620.699
transgenic ySAMdc/azygous control (breaker)0.875950.49
transgenic ySAMdc/azygous control (red)1.029840.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.88310.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.566030.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.922171
Manapal/WT (break)0.999311
Manapal/WT (red)1.169511