Expression of 1-1-4.2.12.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86909 | 0.486 |
27DAP/17DAP | 0.90931 | 0.81 |
39DAP/27DAP | 1.24858 | 0.53 |
41DAP/39DAP | 0.77909 | 0.208 |
42DAP/41DAP | 1.11798 | 0.931 |
43DAP/42DAP | 1.02866 | 1 |
47DAP/43DAP | 1.16122 | 0.285 |
52DAP/47DAP | 1.42278 | 0.3 |
57DAP/52DAP | 1.36038 | 0.837 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1135 | 0.846 |
17DAP/reference | 1.16321 | 0.384 |
27DAP/reference | 0.96459 | 0.595 |
39DAP/reference | 1.15579 | 0.343 |
41DAP/reference | 1.08696 | 0.552 |
42DAP/reference | 1.22298 | 0.003 |
43DAP/reference | 1.22075 | 0.403 |
47DAP/reference | 1.21655 | 0.136 |
52DAP/reference | 1.26563 | 0.056 |
57DAP/reference | 1.25381 | 0.127 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.63325 | |
27DAP/17DAP | 1.71466 | |
39DAP/27DAP | 0.97086 | |
41DAP/39DAP | 1.63133 | |
42DAP/41DAP | 1.35466 | 0.81 |
43DAP/42DAP | N/A | N/A |
47DAP/43DAP | 0.97138 | 0.87 |
52DAP/47DAP | 0.45718 | |
57DAP/52DAP | 0.79842 | 0.665 |
57DAP/7DAP | 2.31437 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87875 | 0.115 |
17DAP/reference | 1.02731 | 1 |
27DAP/reference | 1.0197 | 1 |
39DAP/reference | 0.83123 | 0.064 |
41DAP/reference | 0.815 | 0.046 |
42DAP/reference | 0.74996 | 0.021 |
43DAP/reference | 0.70439 | 0.013 |
47DAP/reference | 1.08999 | 0.965 |
52DAP/reference | 0.84627 | 0.15 |
57DAP/reference | 0.84265 | 0.057 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76415 | 0.17 |
17DAP/reference | 1.04665 | 0.176 |
27DAP/reference | 0.90358 | 0.34 |
39DAP/reference | 1.22997 | 0.263 |
41DAP/reference | 1.29436 | 0.149 |
42DAP/reference | 1.04615 | 0.73 |
43DAP/reference | 1.22615 | 0.109 |
47DAP/reference | 1.24824 | 0.148 |
52DAP/reference | 1.02155 | 1 |
57DAP/reference | 0.84239 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92941 | 0.335 |
17DAP/reference | 1.08412 | 0.602 |
27DAP/reference | 0.99023 | 0.691 |
39DAP/reference | 0.87025 | 0.133 |
41DAP/reference | 1.023 | 0.961 |
42DAP/reference | 1.11505 | 0.55 |
43DAP/reference | 1.14119 | 0.734 |
47DAP/reference | 1.06523 | 0.901 |
52DAP/reference | 0.9727 | 0.675 |
57DAP/reference | 1.06711 | 0.991 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.58183 | 0.611 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.60365 | |
51DAP/34DAP | 1.1959 | 0.73 |
52DAP/51DAP | 0.68178 | |
53DAP/52DAP | 1.48084 | 0.057 |
55DAP/53DAP | 0.96117 | 0.807 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | 1.1553 | 0.902 |
68DAP/62DAP | 1.1177 | 0.919 |
68DAP/14DAP | 0.99662 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.35731 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.69629 | 0.045 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.41657 | |
Mature Eggplant/Ripe Tomato | 0.49354 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.10079 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.20221 | 0.694 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.48869 | |
4-3-2/M82 | 1.25257 | 0.508 |
4-3/M82 | 1.28531 | 1 |
5-3/M82 | 1.04881 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.89171 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.30457 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.24018 | |
IL2-6/WTpooled | 0.99191 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.01997 | 1 |
IL12-4/WTpooled | 0.99637 | 1 |
IL1-4/WTpooled | 0.96989 | 0.402 |
WT/WTpooled | 1.00448 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93749 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.05479 | |
DC3000/delta hrp 24h | 0.87062 | 0.269 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.15605 | 0.259 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.27162 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 0.87595 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.02984 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.8831 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.56603 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92217 | 1 |
Manapal/WT (break) | 0.99931 | 1 |
Manapal/WT (red) | 1.16951 | 1 |
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