Expression of 1-1-4.2.12.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.948160.64
27DAP/17DAP0.940450.863
39DAP/27DAP0.931170.608
41DAP/39DAP1.292050.273
42DAP/41DAP1.075250.945
43DAP/42DAP0.894590.483
47DAP/43DAP0.916480.701
52DAP/47DAP1.41150.29
57DAP/52DAP0.94880.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.295980.029
17DAP/reference1.104940.049
27DAP/reference1.122550.073
39DAP/reference0.980740.734
41DAP/reference1.266650.111
42DAP/reference1.255250.001
43DAP/reference1.08570.646
47DAP/reference1.157030.002
52DAP/reference1.343820.053
57DAP/reference1.029680.853

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.019660.841
27DAP/17DAP1.03269
39DAP/27DAP0.979150.844
41DAP/39DAP1.009080.909
42DAP/41DAP1.015370.961
43DAP/42DAP0.942980.224
47DAP/43DAP1.017780.88
52DAP/47DAP1.072650.816
57DAP/52DAP0.999910.913
57DAP/7DAP1.040981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.984640.613
17DAP/reference0.999021
27DAP/reference0.998160.748
39DAP/reference0.998190.745
41DAP/reference1.048330.402
42DAP/reference1.033450.308
43DAP/reference1.049640.432
47DAP/reference1.012921
52DAP/reference1.101370.058
57DAP/reference1.151230.158

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.333830.054
17DAP/reference1.426680.012
27DAP/reference1.320290.097
39DAP/reference1.216460.047
41DAP/reference1.107070.814
42DAP/reference1.143350.317
43DAP/reference1.377960.082
47DAP/reference1.178430.012
52DAP/reference1.234460.009
57DAP/reference1.219890.051

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.969940.422
17DAP/reference1.126260.467
27DAP/reference1.008041
39DAP/reference1.065450.097
41DAP/reference1.025250.605
42DAP/reference1.031570.877
43DAP/reference1.167170.326
47DAP/reference1.039350.966
52DAP/reference1.010751
57DAP/reference1.238280.18

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.90760.807
26DAP/20DAP1.084210.727
34DAP/26DAP0.949690.826
51DAP/34DAP1.060540.581
52DAP/51DAP1.036910.776
53DAP/52DAPN/AN/A
55DAP/53DAPN/AN/A
57DAP/55DAP0.92579
62DAP/57DAP1.169810.622
68DAP/62DAP0.826630.609
68DAP/14DAP0.842791

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.056230.172

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.264160.063
Mature Green Tomato/Ripe Tomato1.105960.478
Immature Eggplant/Mature Eggplant0.624380.077
Ripe Pepper/Ripe Tomato0.967351
Mature Eggplant/Ripe Tomato2.736760.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.891160.613
1-1-2/M820.912590.804
12-2/M820.83012
12-4/M821.031871
1-3/M821.061010.479
2-1-1/M821.00423
2-1/M821.23968
2-6/M820.970361
3-2/M821.04055
4-1-1/M821.057120.657
4-1/M821.009561
4-3-2/M82N/AN/A
4-3/M820.983960.72
5-3/M820.999411
6-2/M820.88257
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.86974
9-3-2/M820.943060.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.949281
IL7-5/WTpooled0.963711
IL7-3/WTpooled1.300870.362
IL12-4/WTpooled1.108840.523
IL1-4/WTpooled1.079271
WT/WTpooled1.018271

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.853210.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.999911
DC3000/delta hrp 6h1.146811
DC3000/delta hrp 12h1.081111
DC3000/delta hrp 24h0.909290.473

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.026970.515
DC3000 delta B/DC3000 delta AB1.081210.472

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.919591
Exp 36h0.660180.456
Exp 60h0.475490.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.984471
Var 0h1.018291
Var 12h I row2-row11.32020.242
Var 12h NI row2-row11.141541
Var 36h I row2-row10.940161
Var 36h NI row2-row10.878880.549
Var 60h I row2-row11.079861
Var 60h NI row2-row10.826540.351
Time course 0hI-0hNI1.048290.867
Time course 12hI-12hNI1.013580.888
Time course 36hI-36hNI1.051410.513
Time course 60hI-60hNI1.334440.029

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.915780.289
transgenic ySAMdc/azygous control (breaker)1.41740.172
transgenic ySAMdc/azygous control (red)1.175810.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.919940.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.634120.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.521690.093
Manapal/WT (break)1.673430.13
Manapal/WT (red)1.320070.15