Expression of 1-1-4.2.13.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.484230.142
27DAP/17DAP1.673680.284
39DAP/27DAP1.287740.283
41DAP/39DAP1.098210.854
42DAP/41DAP0.819661
43DAP/42DAP0.950350.864
47DAP/43DAP0.692890.185
52DAP/47DAP0.835220.55
57DAP/52DAP0.840520.622

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.777730.057
17DAP/reference0.931350.194
27DAP/reference0.943830.208
39DAP/reference0.907430.128
41DAP/reference0.859030.026
42DAP/reference0.883380.007
43DAP/reference0.895090.073
47DAP/reference0.801660.003
52DAP/reference0.873230.115
57DAP/reference0.873520.044

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.159650.319
27DAP/17DAP2.067240.023
39DAP/27DAP1.114790.422
41DAP/39DAP0.595840.016
42DAP/41DAP1.569230.028
43DAP/42DAP0.744060.023
47DAP/43DAP0.857310.141
52DAP/47DAP1.016321
57DAP/52DAP0.760650.121
57DAP/7DAP1.11606

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.04130.876
17DAP/reference0.983220.295
27DAP/reference0.987530.43
39DAP/reference1.022970.57
41DAP/reference1.065440.184
42DAP/reference1.007841
43DAP/reference1.014870.511
47DAP/reference1.251540.133
52DAP/reference1.079580.007
57DAP/reference0.980390.353

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960540.592
17DAP/reference0.673660.003
27DAP/reference0.964140.381
39DAP/reference0.695740.016
41DAP/reference0.855310.057
42DAP/reference0.962390.433
43DAP/reference0.951760.459
47DAP/reference1.043360.675
52DAP/reference0.758530.004
57DAP/reference0.872950.05

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.948880.489
17DAP/reference0.883140.203
27DAP/reference1.109650.131
39DAP/reference1.10430.235
41DAP/reference1.000081
42DAP/reference0.882770.172
43DAP/reference0.778420.143
47DAP/reference0.756350.009
52DAP/reference0.873620.148
57DAP/reference0.597440.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.001151
26DAP/20DAP1.591460.102
34DAP/26DAP0.764930.741
51DAP/34DAP1.332120.637
52DAP/51DAP0.75751
53DAP/52DAP3.371850.029
55DAP/53DAP0.592290.022
57DAP/55DAP1.033820.888
62DAP/57DAP1.310580.678
68DAP/62DAP0.695360.668
68DAP/14DAP0.880281

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.946030.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato4.744560.015
Immature Eggplant/Mature Eggplant8.557750.05
Ripe Pepper/Ripe Tomato0.28434
Mature Eggplant/Ripe Tomato2.641290.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.074621
1-1-2/M820.935331
12-2/M821.4637
12-4/M821.23229
1-3/M820.5672
2-1-1/M820.99471
2-1/M82N/AN/A
2-6/M821.021031
3-2/M82N/AN/A
4-1-1/M821.126661
4-1/M821.05406
4-3-2/M82N/AN/A
4-3/M820.974581
5-3/M820.848890.447
6-2/M820.650720.481
6-3/M820.967231
7-1/M82N/AN/A
7-2/M820.907860.46
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.076780.493
IL2-6/WTpooled0.876710.473
IL7-5/WTpooled0.57716
IL7-3/WTpooled0.944020.418
IL12-4/WTpooled1.051040.839
IL1-4/WTpooled1.042861
WT/WTpooled0.980151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.040640.101

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.083670.921
DC3000/delta hrp 6h1.445741
DC3000/delta hrp 12h1.017351
DC3000/delta hrp 24h0.910850.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.92128
DC3000 delta B/DC3000 delta AB1.597090.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.042751
Exp 36h0.872870.623
Exp 60h1.002781

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.981441
Var 0h0.895411
Var 12h I row2-row10.950730.856
Var 12h NI row2-row11.091370.649
Var 36h I row2-row10.950291
Var 36h NI row2-row11.420450.482
Var 60h I row2-row10.701760.285
Var 60h NI row2-row11.35920.904
Time course 0hI-0hNI1.140680.662
Time course 12hI-12hNI0.777040.044
Time course 36hI-36hNI0.818310.136
Time course 60hI-60hNI1.688620.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.905410.567
transgenic ySAMdc/azygous control (breaker)0.468820.49
transgenic ySAMdc/azygous control (red)0.951231

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.049260.119

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.739470.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.939051
Manapal/WT (red)N/AN/A