Expression of 1-1-4.2.13.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.48423 | 0.142 |
27DAP/17DAP | 1.67368 | 0.284 |
39DAP/27DAP | 1.28774 | 0.283 |
41DAP/39DAP | 1.09821 | 0.854 |
42DAP/41DAP | 0.81966 | 1 |
43DAP/42DAP | 0.95035 | 0.864 |
47DAP/43DAP | 0.69289 | 0.185 |
52DAP/47DAP | 0.83522 | 0.55 |
57DAP/52DAP | 0.84052 | 0.622 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77773 | 0.057 |
17DAP/reference | 0.93135 | 0.194 |
27DAP/reference | 0.94383 | 0.208 |
39DAP/reference | 0.90743 | 0.128 |
41DAP/reference | 0.85903 | 0.026 |
42DAP/reference | 0.88338 | 0.007 |
43DAP/reference | 0.89509 | 0.073 |
47DAP/reference | 0.80166 | 0.003 |
52DAP/reference | 0.87323 | 0.115 |
57DAP/reference | 0.87352 | 0.044 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15965 | 0.319 |
27DAP/17DAP | 2.06724 | 0.023 |
39DAP/27DAP | 1.11479 | 0.422 |
41DAP/39DAP | 0.59584 | 0.016 |
42DAP/41DAP | 1.56923 | 0.028 |
43DAP/42DAP | 0.74406 | 0.023 |
47DAP/43DAP | 0.85731 | 0.141 |
52DAP/47DAP | 1.01632 | 1 |
57DAP/52DAP | 0.76065 | 0.121 |
57DAP/7DAP | 1.11606 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0413 | 0.876 |
17DAP/reference | 0.98322 | 0.295 |
27DAP/reference | 0.98753 | 0.43 |
39DAP/reference | 1.02297 | 0.57 |
41DAP/reference | 1.06544 | 0.184 |
42DAP/reference | 1.00784 | 1 |
43DAP/reference | 1.01487 | 0.511 |
47DAP/reference | 1.25154 | 0.133 |
52DAP/reference | 1.07958 | 0.007 |
57DAP/reference | 0.98039 | 0.353 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96054 | 0.592 |
17DAP/reference | 0.67366 | 0.003 |
27DAP/reference | 0.96414 | 0.381 |
39DAP/reference | 0.69574 | 0.016 |
41DAP/reference | 0.85531 | 0.057 |
42DAP/reference | 0.96239 | 0.433 |
43DAP/reference | 0.95176 | 0.459 |
47DAP/reference | 1.04336 | 0.675 |
52DAP/reference | 0.75853 | 0.004 |
57DAP/reference | 0.87295 | 0.05 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94888 | 0.489 |
17DAP/reference | 0.88314 | 0.203 |
27DAP/reference | 1.10965 | 0.131 |
39DAP/reference | 1.1043 | 0.235 |
41DAP/reference | 1.00008 | 1 |
42DAP/reference | 0.88277 | 0.172 |
43DAP/reference | 0.77842 | 0.143 |
47DAP/reference | 0.75635 | 0.009 |
52DAP/reference | 0.87362 | 0.148 |
57DAP/reference | 0.59744 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00115 | 1 |
26DAP/20DAP | 1.59146 | 0.102 |
34DAP/26DAP | 0.76493 | 0.741 |
51DAP/34DAP | 1.33212 | 0.637 |
52DAP/51DAP | 0.7575 | 1 |
53DAP/52DAP | 3.37185 | 0.029 |
55DAP/53DAP | 0.59229 | 0.022 |
57DAP/55DAP | 1.03382 | 0.888 |
62DAP/57DAP | 1.31058 | 0.678 |
68DAP/62DAP | 0.69536 | 0.668 |
68DAP/14DAP | 0.88028 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.94603 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 4.74456 | 0.015 |
Immature Eggplant/Mature Eggplant | 8.55775 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.28434 | |
Mature Eggplant/Ripe Tomato | 2.64129 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07462 | 1 |
1-1-2/M82 | 0.93533 | 1 |
12-2/M82 | 1.4637 | |
12-4/M82 | 1.23229 | |
1-3/M82 | 0.5672 | |
2-1-1/M82 | 0.9947 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.02103 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.12666 | 1 |
4-1/M82 | 1.05406 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.97458 | 1 |
5-3/M82 | 0.84889 | 0.447 |
6-2/M82 | 0.65072 | 0.481 |
6-3/M82 | 0.96723 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.90786 | 0.46 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.07678 | 0.493 |
IL2-6/WTpooled | 0.87671 | 0.473 |
IL7-5/WTpooled | 0.57716 | |
IL7-3/WTpooled | 0.94402 | 0.418 |
IL12-4/WTpooled | 1.05104 | 0.839 |
IL1-4/WTpooled | 1.04286 | 1 |
WT/WTpooled | 0.98015 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04064 | 0.101 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08367 | 0.921 |
DC3000/delta hrp 6h | 1.44574 | 1 |
DC3000/delta hrp 12h | 1.01735 | 1 |
DC3000/delta hrp 24h | 0.91085 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.92128 | |
DC3000 delta B/DC3000 delta AB | 1.59709 | 0.081 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04275 | 1 |
Exp 36h | 0.87287 | 0.623 |
Exp 60h | 1.00278 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98144 | 1 |
Var 0h | 0.89541 | 1 |
Var 12h I row2-row1 | 0.95073 | 0.856 |
Var 12h NI row2-row1 | 1.09137 | 0.649 |
Var 36h I row2-row1 | 0.95029 | 1 |
Var 36h NI row2-row1 | 1.42045 | 0.482 |
Var 60h I row2-row1 | 0.70176 | 0.285 |
Var 60h NI row2-row1 | 1.3592 | 0.904 |
Time course 0hI-0hNI | 1.14068 | 0.662 |
Time course 12hI-12hNI | 0.77704 | 0.044 |
Time course 36hI-36hNI | 0.81831 | 0.136 |
Time course 60hI-60hNI | 1.68862 | 0.012 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90541 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.46882 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.95123 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04926 | 0.119 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.73947 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.93905 | 1 |
Manapal/WT (red) | N/A | N/A |
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