Expression of 1-1-4.2.14.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84662 | 0.419 |
27DAP/17DAP | 0.84584 | 0.679 |
39DAP/27DAP | 1.34024 | 0.129 |
41DAP/39DAP | 0.9287 | 0.694 |
42DAP/41DAP | 1.3263 | 0.712 |
43DAP/42DAP | 1.12583 | 0.999 |
47DAP/43DAP | 0.96496 | 0.821 |
52DAP/47DAP | 1.1779 | 0.965 |
57DAP/52DAP | 1.1461 | 0.907 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05706 | 0.46 |
17DAP/reference | 0.89504 | 0.012 |
27DAP/reference | 0.88315 | 0.059 |
39DAP/reference | 0.91157 | 0.136 |
41DAP/reference | 0.79232 | 0.013 |
42DAP/reference | 1.10258 | 0.13 |
43DAP/reference | 0.98637 | 0.763 |
47DAP/reference | 1.08657 | 0.284 |
52DAP/reference | 1.20956 | 0.354 |
57DAP/reference | 1.15847 | 0.114 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95093 | 0.679 |
27DAP/17DAP | 0.90483 | 0.58 |
39DAP/27DAP | 1.11498 | 0.56 |
41DAP/39DAP | 1.06188 | 0.88 |
42DAP/41DAP | 1.04176 | 0.935 |
43DAP/42DAP | 1.13525 | 0.112 |
47DAP/43DAP | 0.95044 | 0.597 |
52DAP/47DAP | 1.01735 | 0.979 |
57DAP/52DAP | 0.86273 | 0.457 |
57DAP/7DAP | 0.86911 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80015 | 0.06 |
17DAP/reference | 0.84314 | 0.044 |
27DAP/reference | 0.85545 | 0.019 |
39DAP/reference | 0.75114 | 0.011 |
41DAP/reference | 0.73389 | 0.027 |
42DAP/reference | 0.66425 | 0.015 |
43DAP/reference | 0.69466 | 0.014 |
47DAP/reference | 0.90342 | 0.383 |
52DAP/reference | 0.67212 | 0.02 |
57DAP/reference | 0.62338 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09184 | 0.501 |
17DAP/reference | 0.81414 | 0.086 |
27DAP/reference | 1.1625 | 0.271 |
39DAP/reference | 1.03681 | 1 |
41DAP/reference | 1.1957 | 0.372 |
42DAP/reference | 0.93827 | 0.289 |
43DAP/reference | 1.2421 | 0.107 |
47DAP/reference | 1.05193 | 0.454 |
52DAP/reference | 0.95642 | 0.38 |
57DAP/reference | 0.90937 | 0.318 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82404 | 0.057 |
17DAP/reference | 1.00684 | 1 |
27DAP/reference | 0.85186 | 0.055 |
39DAP/reference | 0.85525 | 0.025 |
41DAP/reference | 0.91322 | 0.077 |
42DAP/reference | 0.97556 | 0.671 |
43DAP/reference | 0.98126 | 0.545 |
47DAP/reference | 1.163 | 0.073 |
52DAP/reference | 0.98862 | 0.69 |
57DAP/reference | 1.07459 | 0.814 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03382 | 1 |
26DAP/20DAP | 1.14775 | 1 |
34DAP/26DAP | 1.41062 | 0.819 |
51DAP/34DAP | 1.06001 | 0.927 |
52DAP/51DAP | 0.86227 | 0.067 |
53DAP/52DAP | 1.33394 | 0.58 |
55DAP/53DAP | 1.06565 | 1 |
57DAP/55DAP | 1.30643 | 0.881 |
62DAP/57DAP | 0.85435 | 0.28 |
68DAP/62DAP | 1.17153 | 0.672 |
68DAP/14DAP | 0.9684 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.89454 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.21138 | 0.068 |
Mature Green Tomato/Ripe Tomato | 1.02554 | 0.66 |
Immature Eggplant/Mature Eggplant | 0.93053 | 0.545 |
Ripe Pepper/Ripe Tomato | 1.44747 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.75413 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03792 | 1 |
1-1-2/M82 | 0.98712 | 1 |
12-2/M82 | 0.85096 | 0.692 |
12-4/M82 | 0.89733 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.8974 | 0.465 |
2-1/M82 | 0.98426 | |
2-6/M82 | 1.21148 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.1796 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.31985 | |
4-3/M82 | 1.29084 | 0.268 |
5-3/M82 | 1.01695 | 1 |
6-2/M82 | 1.17561 | |
6-3/M82 | 1.03976 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.06209 | |
9-3-2/M82 | 0.89081 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.06814 | 0.493 |
IL2-6/WTpooled | 0.91185 | 0.473 |
IL7-5/WTpooled | 1.32602 | 0.792 |
IL7-3/WTpooled | 1.1004 | 1 |
IL12-4/WTpooled | 1.04641 | 0.785 |
IL1-4/WTpooled | 1.10207 | 1 |
WT/WTpooled | 0.97789 | 0.962 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9539 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09003 | 0.774 |
DC3000/delta hrp 6h | 0.98006 | 0.95 |
DC3000/delta hrp 12h | 0.9448 | 1 |
DC3000/delta hrp 24h | 1.03478 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.97731 | 1 |
DC3000 delta B/DC3000 delta AB | 1.03234 | 0.601 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15623 | 1 |
Exp 36h | 1.05816 | 1 |
Exp 60h | 0.91317 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03516 | 1 |
Var 0h | 1.06435 | 0.98 |
Var 12h I row2-row1 | 0.97856 | 0.856 |
Var 12h NI row2-row1 | 1.06632 | 0.649 |
Var 36h I row2-row1 | 0.92689 | 1 |
Var 36h NI row2-row1 | 0.92237 | 0.549 |
Var 60h I row2-row1 | 0.95095 | 0.952 |
Var 60h NI row2-row1 | 0.95215 | 0.866 |
Time course 0hI-0hNI | 1.01385 | 0.852 |
Time course 12hI-12hNI | 1.02702 | 0.762 |
Time course 36hI-36hNI | 1.13357 | 0.05 |
Time course 60hI-60hNI | 1.27622 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98019 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.00941 | 1 |
transgenic ySAMdc/azygous control (red) | 1.04025 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98899 | 0.737 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98336 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.06918 | 1 |
Manapal/WT (break) | 0.78967 | 0.333 |
Manapal/WT (red) | 0.87373 | 0.229 |
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