Expression of 1-1-4.2.14.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.846620.419
27DAP/17DAP0.845840.679
39DAP/27DAP1.340240.129
41DAP/39DAP0.92870.694
42DAP/41DAP1.32630.712
43DAP/42DAP1.125830.999
47DAP/43DAP0.964960.821
52DAP/47DAP1.17790.965
57DAP/52DAP1.14610.907

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.057060.46
17DAP/reference0.895040.012
27DAP/reference0.883150.059
39DAP/reference0.911570.136
41DAP/reference0.792320.013
42DAP/reference1.102580.13
43DAP/reference0.986370.763
47DAP/reference1.086570.284
52DAP/reference1.209560.354
57DAP/reference1.158470.114

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.950930.679
27DAP/17DAP0.904830.58
39DAP/27DAP1.114980.56
41DAP/39DAP1.061880.88
42DAP/41DAP1.041760.935
43DAP/42DAP1.135250.112
47DAP/43DAP0.950440.597
52DAP/47DAP1.017350.979
57DAP/52DAP0.862730.457
57DAP/7DAP0.869111

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.800150.06
17DAP/reference0.843140.044
27DAP/reference0.855450.019
39DAP/reference0.751140.011
41DAP/reference0.733890.027
42DAP/reference0.664250.015
43DAP/reference0.694660.014
47DAP/reference0.903420.383
52DAP/reference0.672120.02
57DAP/reference0.623380.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.091840.501
17DAP/reference0.814140.086
27DAP/reference1.16250.271
39DAP/reference1.036811
41DAP/reference1.19570.372
42DAP/reference0.938270.289
43DAP/reference1.24210.107
47DAP/reference1.051930.454
52DAP/reference0.956420.38
57DAP/reference0.909370.318

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.824040.057
17DAP/reference1.006841
27DAP/reference0.851860.055
39DAP/reference0.855250.025
41DAP/reference0.913220.077
42DAP/reference0.975560.671
43DAP/reference0.981260.545
47DAP/reference1.1630.073
52DAP/reference0.988620.69
57DAP/reference1.074590.814

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.033821
26DAP/20DAP1.147751
34DAP/26DAP1.410620.819
51DAP/34DAP1.060010.927
52DAP/51DAP0.862270.067
53DAP/52DAP1.333940.58
55DAP/53DAP1.065651
57DAP/55DAP1.306430.881
62DAP/57DAP0.854350.28
68DAP/62DAP1.171530.672
68DAP/14DAP0.96841

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.894540.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.211380.068
Mature Green Tomato/Ripe Tomato1.025540.66
Immature Eggplant/Mature Eggplant0.930530.545
Ripe Pepper/Ripe Tomato1.447470.258
Mature Eggplant/Ripe Tomato0.754130.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.037921
1-1-2/M820.987121
12-2/M820.850960.692
12-4/M820.897331
1-3/M82N/AN/A
2-1-1/M820.89740.465
2-1/M820.98426
2-6/M821.21148
3-2/M82N/AN/A
4-1-1/M821.17961
4-1/M82N/AN/A
4-3-2/M821.31985
4-3/M821.290840.268
5-3/M821.016951
6-2/M821.17561
6-3/M821.039761
7-1/M82N/AN/A
7-2/M821.06209
9-3-2/M820.890810.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.068140.493
IL2-6/WTpooled0.911850.473
IL7-5/WTpooled1.326020.792
IL7-3/WTpooled1.10041
IL12-4/WTpooled1.046410.785
IL1-4/WTpooled1.102071
WT/WTpooled0.977890.962

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.95391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.090030.774
DC3000/delta hrp 6h0.980060.95
DC3000/delta hrp 12h0.94481
DC3000/delta hrp 24h1.034780.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.977311
DC3000 delta B/DC3000 delta AB1.032340.601

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.156231
Exp 36h1.058161
Exp 60h0.913170.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.035161
Var 0h1.064350.98
Var 12h I row2-row10.978560.856
Var 12h NI row2-row11.066320.649
Var 36h I row2-row10.926891
Var 36h NI row2-row10.922370.549
Var 60h I row2-row10.950950.952
Var 60h NI row2-row10.952150.866
Time course 0hI-0hNI1.013850.852
Time course 12hI-12hNI1.027020.762
Time course 36hI-36hNI1.133570.05
Time course 60hI-60hNI1.276220.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.980190.722
transgenic ySAMdc/azygous control (breaker)1.009411
transgenic ySAMdc/azygous control (red)1.040250.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.988990.737

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.983360.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.069181
Manapal/WT (break)0.789670.333
Manapal/WT (red)0.873730.229