Expression of 1-1-4.2.14.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.124560.588
27DAP/17DAP0.939840.899
39DAP/27DAP1.392390.204
41DAP/39DAP0.814750.322
42DAP/41DAP0.943021
43DAP/42DAP0.870330.77
47DAP/43DAP1.060280.873
52DAP/47DAP1.551790.235
57DAP/52DAP1.540930.567

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.649980.007
17DAP/reference1.383240.019
27DAP/reference1.928490.007
39DAP/reference1.557150.093
41DAP/reference1.804470.014
42DAP/reference1.447370.003
43DAP/reference1.030890.812
47DAP/reference1.124950.071
52DAP/reference1.103680.766
57DAP/reference1.048260.802

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.042780.593
27DAP/17DAP0.975670.854
39DAP/27DAP0.956760.502
41DAP/39DAP1.085390.753
42DAP/41DAP0.978870.772
43DAP/42DAP1.010660.788
47DAP/43DAP0.968310.815
52DAP/47DAP0.929450.528
57DAP/52DAP0.992550.845
57DAP/7DAP1.162481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.598360.03
17DAP/reference1.117750.199
27DAP/reference1.019871
39DAP/reference1.207680.12
41DAP/reference1.050490.445
42DAP/reference0.994650.641
43DAP/reference0.891030.082
47DAP/reference0.937640.383
52DAP/reference1.194480.033
57DAP/reference1.053230.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.308420.443
17DAP/reference1.698980.025
27DAP/reference1.652580.076
39DAP/reference1.895530.011
41DAP/reference1.252980.172
42DAP/reference1.511280.033
43DAP/reference1.342520.526
47DAP/reference1.321420.008
52DAP/reference1.122050.181
57DAP/reference1.149040.848

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.326430.076
17DAP/reference1.163690.137
27DAP/reference1.011580.805
39DAP/reference1.207280.134
41DAP/reference1.065020.343
42DAP/reference1.148050.743
43DAP/reference1.158830.572
47DAP/reference0.92120.315
52DAP/reference0.884220.289
57DAP/reference1.061690.814

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.73695
26DAP/20DAP1.190480.361
34DAP/26DAP1.004341
51DAP/34DAP0.819470.125
52DAP/51DAP1.043530.733
53DAP/52DAP1.036440.895
55DAP/53DAP1.108480.848
57DAP/55DAP8.825060.818
62DAP/57DAP1.108510.723
68DAP/62DAP1.037831
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.9370.341

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.159620.059
Mature Green Tomato/Ripe Tomato1.79350.437
Immature Eggplant/Mature Eggplant1.381960.053
Ripe Pepper/Ripe Tomato1.497631
Mature Eggplant/Ripe Tomato2.056170.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.174281
1-1-2/M820.820950.958
12-2/M820.857780.678
12-4/M820.951661
1-3/M821.21899
2-1-1/M820.69123
2-1/M82N/AN/A
2-6/M820.930521
3-2/M82N/AN/A
4-1-1/M821.121651
4-1/M82N/AN/A
4-3-2/M821.565480.262
4-3/M821.661051
5-3/M821.370130.496
6-2/M82N/AN/A
6-3/M821.014021
7-1/M820.88589
7-2/M821.089181
9-3-2/M821.10271

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.23510.456
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.938021
IL12-4/WTpooled1.132830.737
IL1-4/WTpooled0.90498
WT/WTpooled0.97661

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.136820.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.058750.921
DC3000/delta hrp 6h1.059830.95
DC3000/delta hrp 12h1.171511
DC3000/delta hrp 24h0.99781

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.019960.598
DC3000 delta B/DC3000 delta AB1.088330.433

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.806341
Exp 36h1.179521
Exp 60h1.009111

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.041081
Var 0h0.872311
Var 12h I row2-row11.082330.473
Var 12h NI row2-row10.888030.627
Var 36h I row2-row10.991611
Var 36h NI row2-row10.950410.706
Var 60h I row2-row10.90990.285
Var 60h NI row2-row10.923290.572
Time course 0hI-0hNI0.989651
Time course 12hI-12hNI1.045370.672
Time course 36hI-36hNI1.161940.089
Time course 60hI-60hNI1.338340.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.030790.331
transgenic ySAMdc/azygous control (breaker)1.250680.248
transgenic ySAMdc/azygous control (red)1.196540.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007690.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.799950.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.674640.172
Manapal/WT (break)0.821630.299
Manapal/WT (red)1.251880.413