Expression of 1-1-4.2.14.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99924 | 0.961 |
27DAP/17DAP | 1.06102 | 0.881 |
39DAP/27DAP | 0.97266 | 0.733 |
41DAP/39DAP | 1.27956 | 0.321 |
42DAP/41DAP | 0.9598 | 1 |
43DAP/42DAP | 0.92472 | 0.787 |
47DAP/43DAP | 1.20432 | 0.659 |
52DAP/47DAP | 1.58326 | 0.325 |
57DAP/52DAP | 1.03518 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26514 | 0.218 |
17DAP/reference | 0.91867 | 0.031 |
27DAP/reference | 1.03547 | 0.771 |
39DAP/reference | 0.9717 | 0.6 |
41DAP/reference | 0.9806 | 0.667 |
42DAP/reference | 1.08626 | 0.219 |
43DAP/reference | 0.94052 | 0.118 |
47DAP/reference | 0.96906 | 0.322 |
52DAP/reference | 1.028 | 0.548 |
57DAP/reference | 0.96927 | 0.156 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98693 | 0.763 |
27DAP/17DAP | 0.99056 | 0.943 |
39DAP/27DAP | 1.01525 | 0.793 |
41DAP/39DAP | 1.00149 | 1 |
42DAP/41DAP | 1.00934 | 1 |
43DAP/42DAP | 1.02036 | 0.746 |
47DAP/43DAP | 0.99941 | 1 |
52DAP/47DAP | 1.04563 | 0.816 |
57DAP/52DAP | 1.04612 | 0.718 |
57DAP/7DAP | 1.09365 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81508 | 0.091 |
17DAP/reference | 0.69794 | 0.013 |
27DAP/reference | 0.6988 | 0.014 |
39DAP/reference | 0.92353 | 0.307 |
41DAP/reference | 0.96908 | 0.489 |
42DAP/reference | 0.85476 | 0.09 |
43DAP/reference | 0.81306 | 0.017 |
47DAP/reference | 0.88666 | 0.079 |
52DAP/reference | 0.75274 | 0.017 |
57DAP/reference | 0.73854 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1547 | 0.249 |
17DAP/reference | 1.08432 | 0.508 |
27DAP/reference | 1.23633 | 0.182 |
39DAP/reference | 1.11144 | 0.132 |
41DAP/reference | 0.96248 | 0.412 |
42DAP/reference | 0.96507 | 0.392 |
43DAP/reference | 1.20711 | 0.038 |
47DAP/reference | 0.91666 | 0.133 |
52DAP/reference | 1.0814 | 0.279 |
57DAP/reference | 1.07166 | 0.705 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84934 | 0.048 |
17DAP/reference | 0.92836 | 0.322 |
27DAP/reference | 0.84794 | 0.051 |
39DAP/reference | 0.9326 | 0.393 |
41DAP/reference | 0.8176 | 0.077 |
42DAP/reference | 0.77991 | 0.028 |
43DAP/reference | 0.83811 | 0.11 |
47DAP/reference | 0.96766 | 0.348 |
52DAP/reference | 1.01237 | 0.65 |
57DAP/reference | 0.70093 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99648 | 1 |
26DAP/20DAP | 0.99343 | 1 |
34DAP/26DAP | 1.03815 | 1 |
51DAP/34DAP | 0.93084 | 0.449 |
52DAP/51DAP | 1.01966 | 0.821 |
53DAP/52DAP | 1.07306 | 0.594 |
55DAP/53DAP | 1.10633 | 0.317 |
57DAP/55DAP | 1.07243 | 0.915 |
62DAP/57DAP | 0.97324 | 0.994 |
68DAP/62DAP | 0.92201 | 0.609 |
68DAP/14DAP | 0.95884 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93298 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.10491 | 0.417 |
Mature Green Tomato/Ripe Tomato | 0.84248 | 0.347 |
Immature Eggplant/Mature Eggplant | 1.04099 | 0.485 |
Ripe Pepper/Ripe Tomato | 0.88943 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.92494 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96512 | 0.944 |
1-1-2/M82 | 0.92795 | 1 |
12-2/M82 | 1.08014 | |
12-4/M82 | 0.90596 | 1 |
1-3/M82 | 0.94649 | 0.501 |
2-1-1/M82 | 1.04898 | |
2-1/M82 | 1.02661 | 1 |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.91636 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.74397 | |
4-3-2/M82 | 0.86222 | 0.698 |
4-3/M82 | 0.90546 | 0.72 |
5-3/M82 | 1.03724 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.98366 | 1 |
9-3-2/M82 | 0.93269 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0626 | 0.277 |
IL2-6/WTpooled | 0.7868 | 0.473 |
IL7-5/WTpooled | 1.14677 | 0.792 |
IL7-3/WTpooled | 1.25194 | 0.362 |
IL12-4/WTpooled | 1.11274 | 0.595 |
IL1-4/WTpooled | 1.12049 | 1 |
WT/WTpooled | 0.97386 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9214 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95016 | 0.839 |
DC3000/delta hrp 6h | 0.80951 | 0.942 |
DC3000/delta hrp 12h | 1.03933 | 1 |
DC3000/delta hrp 24h | 0.92893 | 0.363 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07782 | 0.134 |
DC3000 delta B/DC3000 delta AB | 1.08206 | 0.433 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02298 | 1 |
Exp 36h | 0.85317 | 0.699 |
Exp 60h | 0.89221 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95757 | 1 |
Var 0h | 1.11762 | 0.325 |
Var 12h I row2-row1 | 1.15733 | 0.208 |
Var 12h NI row2-row1 | 1.03659 | 1 |
Var 36h I row2-row1 | 1.06568 | 1 |
Var 36h NI row2-row1 | 0.83014 | 0.584 |
Var 60h I row2-row1 | 1.50204 | 1 |
Var 60h NI row2-row1 | 0.95578 | 1 |
Time course 0hI-0hNI | 1.10164 | 0.833 |
Time course 12hI-12hNI | 1.09593 | 0.554 |
Time course 36hI-36hNI | 1.04145 | 0.401 |
Time course 60hI-60hNI | 1.50337 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95736 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 1.08797 | 1 |
transgenic ySAMdc/azygous control (red) | 0.94351 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98829 | 0.237 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1978 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82725 | 0.172 |
Manapal/WT (break) | 0.96129 | 1 |
Manapal/WT (red) | 0.9968 | 0.863 |
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