Expression of 1-1-4.2.17.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 4.24006 | 0.018 |
27DAP/17DAP | 1.99751 | 0.189 |
39DAP/27DAP | 1.23695 | 0.548 |
41DAP/39DAP | 1.22667 | 0.696 |
42DAP/41DAP | 1.6194 | 0.049 |
43DAP/42DAP | 1.51131 | 0.682 |
47DAP/43DAP | 0.92563 | 0.699 |
52DAP/47DAP | 0.97227 | 0.724 |
57DAP/52DAP | 0.94506 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95491 | 0.442 |
17DAP/reference | 0.8561 | 0.138 |
27DAP/reference | 1.23747 | 0.054 |
39DAP/reference | 1.01033 | 1 |
41DAP/reference | 1.00929 | 1 |
42DAP/reference | 1.41627 | 0.001 |
43DAP/reference | 0.95228 | 0.377 |
47DAP/reference | 1.45525 | 0.004 |
52DAP/reference | 1.80153 | 0.01 |
57DAP/reference | 1.42248 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.3858 | 0.036 |
27DAP/17DAP | 1.29314 | 0.156 |
39DAP/27DAP | 1.59681 | 0.078 |
41DAP/39DAP | 0.71873 | 0.061 |
42DAP/41DAP | 1.15976 | 0.334 |
43DAP/42DAP | 1.45306 | 0.014 |
47DAP/43DAP | 0.95982 | 0.787 |
52DAP/47DAP | 1.34235 | 0.258 |
57DAP/52DAP | 0.9614 | 0.716 |
57DAP/7DAP | 1.97388 | 0.22 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.69968 | 0.091 |
17DAP/reference | 0.92771 | 0.22 |
27DAP/reference | 0.69895 | 0.01 |
39DAP/reference | 1.43853 | 0.01 |
41DAP/reference | 1.02831 | 0.677 |
42DAP/reference | 1.26787 | 0.174 |
43DAP/reference | 1.73436 | 0.039 |
47DAP/reference | 2.05855 | 0.019 |
52DAP/reference | 1.05947 | 0.941 |
57DAP/reference | 1.30455 | 0.087 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98658 | 0.592 |
17DAP/reference | 1.08716 | 0.874 |
27DAP/reference | 0.92064 | 0.317 |
39DAP/reference | 1.19705 | 0.128 |
41DAP/reference | 1.08724 | 0.831 |
42DAP/reference | 1.13399 | 0.398 |
43DAP/reference | 0.90291 | 0.328 |
47DAP/reference | 0.99561 | 0.66 |
52DAP/reference | 1.42774 | 0.02 |
57DAP/reference | 0.90056 | 0.259 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.44419 | 0.048 |
17DAP/reference | 0.97713 | 0.55 |
27DAP/reference | 0.75391 | 0.067 |
39DAP/reference | 1.0168 | 0.962 |
41DAP/reference | 1.21161 | 0.025 |
42DAP/reference | 2.22956 | 0.006 |
43DAP/reference | 1.59221 | 0.01 |
47DAP/reference | 1.52994 | 0.011 |
52DAP/reference | 1.08678 | 0.631 |
57DAP/reference | 1.38235 | 0.274 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.88922 | 0.966 |
26DAP/20DAP | 1.25733 | 0.77 |
34DAP/26DAP | 1.46649 | 1 |
51DAP/34DAP | 0.95917 | 0.747 |
52DAP/51DAP | 1.49425 | 0.925 |
53DAP/52DAP | 1.12404 | 0.738 |
55DAP/53DAP | 0.92121 | 0.746 |
57DAP/55DAP | 1.02767 | 1 |
62DAP/57DAP | 1.33703 | 0.723 |
68DAP/62DAP | 2.00959 | 0.878 |
68DAP/14DAP | 1.19941 | 0.739 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 11.1798 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.80263 | 0.411 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.05662 | |
Mature Eggplant/Ripe Tomato | 0.12328 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.37076 | 0.742 |
1-1-2/M82 | 1.21744 | 1 |
12-2/M82 | 0.99668 | |
12-4/M82 | 1.40811 | 1 |
1-3/M82 | 2.15558 | 0.26 |
2-1-1/M82 | 0.88736 | 0.465 |
2-1/M82 | 0.8096 | 0.345 |
2-6/M82 | 1.07626 | 0.695 |
3-2/M82 | 1.33877 | 0.717 |
4-1-1/M82 | 1.02053 | 1 |
4-1/M82 | 0.80479 | |
4-3-2/M82 | 1.00583 | |
4-3/M82 | 0.9319 | 0.72 |
5-3/M82 | 0.97278 | 1 |
6-2/M82 | 1.0697 | 1 |
6-3/M82 | 0.94623 | 1 |
7-1/M82 | 0.86491 | 0.452 |
7-2/M82 | 0.93358 | 0.881 |
9-3-2/M82 | 1.58176 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.91984 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.61121 | 1 |
IL7-3/WTpooled | 0.71246 | |
IL12-4/WTpooled | 1.31647 | 0.785 |
IL1-4/WTpooled | 0.60614 | 0.476 |
WT/WTpooled | 1.19495 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.24056 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02643 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.74771 | 1 |
DC3000/delta hrp 24h | 1.08885 | 0.582 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 2.58602 | 0.061 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03054 | 1 |
Var 0h | 0.51909 | 1 |
Var 12h I row2-row1 | 0.95435 | 0.856 |
Var 12h NI row2-row1 | 0.66022 | 0.627 |
Var 36h I row2-row1 | 0.72671 | 1 |
Var 36h NI row2-row1 | 0.8698 | 0.549 |
Var 60h I row2-row1 | 1.70834 | 0.562 |
Var 60h NI row2-row1 | 1.05532 | 1 |
Time course 0hI-0hNI | 1.05624 | 0.603 |
Time course 12hI-12hNI | 1.06287 | 0.493 |
Time course 36hI-36hNI | 1.0458 | 0.513 |
Time course 60hI-60hNI | 0.86949 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.77712 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 1.34409 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.96344 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73062 | 1 |
Manapal/WT (break) | 0.73912 | 0.333 |
Manapal/WT (red) | 0.52364 | 0.187 |
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