Expression of 1-1-4.2.17.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.61235 | 0.092 |
27DAP/17DAP | 1.31087 | 0.688 |
39DAP/27DAP | 1.60068 | 0.133 |
41DAP/39DAP | 1.02133 | 0.935 |
42DAP/41DAP | 1.11718 | 0.978 |
43DAP/42DAP | 0.94322 | 0.829 |
47DAP/43DAP | 0.94642 | 0.788 |
52DAP/47DAP | 0.87058 | 0.633 |
57DAP/52DAP | 1.25316 | 0.93 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1667 | 0.085 |
17DAP/reference | 1.02014 | 0.717 |
27DAP/reference | 1.02156 | 0.909 |
39DAP/reference | 1.16174 | 0.218 |
41DAP/reference | 1.08004 | 0.552 |
42DAP/reference | 1.27783 | 0.001 |
43DAP/reference | 1.13409 | 0.252 |
47DAP/reference | 1.03215 | 0.773 |
52DAP/reference | 0.88486 | 0.131 |
57DAP/reference | 0.931 | 0.176 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13853 | 0.708 |
27DAP/17DAP | 0.84924 | 0.446 |
39DAP/27DAP | 1.28891 | 0.231 |
41DAP/39DAP | 1.29675 | 0.347 |
42DAP/41DAP | 0.80682 | 0.143 |
43DAP/42DAP | 0.88407 | 0.336 |
47DAP/43DAP | 1.08483 | 0.756 |
52DAP/47DAP | 0.97846 | 0.919 |
57DAP/52DAP | 1.1257 | 0.547 |
57DAP/7DAP | 1.08188 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12583 | 0.534 |
17DAP/reference | 1.07059 | 0.399 |
27DAP/reference | 1.41491 | 0.01 |
39DAP/reference | 1.11096 | 0.267 |
41DAP/reference | 1.2702 | 0.019 |
42DAP/reference | 1.77999 | 0.012 |
43DAP/reference | 1.26889 | 0.023 |
47DAP/reference | 1.19215 | 0.142 |
52DAP/reference | 1.44 | 0.028 |
57DAP/reference | 1.597 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15894 | 0.193 |
17DAP/reference | 1.14591 | 0.147 |
27DAP/reference | 1.24051 | 0.046 |
39DAP/reference | 0.93808 | 0.281 |
41DAP/reference | 1.06397 | 1 |
42DAP/reference | 1.48243 | 0.015 |
43DAP/reference | 1.84625 | 0.009 |
47DAP/reference | 2.08237 | 0.008 |
52DAP/reference | 0.89571 | 0.086 |
57DAP/reference | 1.50247 | 0.078 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12584 | 0.149 |
17DAP/reference | 1.03948 | 0.72 |
27DAP/reference | 1.25283 | 0.033 |
39DAP/reference | 1.29986 | 0.01 |
41DAP/reference | 1.15447 | 0.089 |
42DAP/reference | 1.08928 | 0.391 |
43DAP/reference | 0.92354 | 0.102 |
47DAP/reference | 1.15166 | 0.01 |
52DAP/reference | 1.03414 | 0.946 |
57DAP/reference | 0.86671 | 0.109 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.35824 | 0.496 |
26DAP/20DAP | 1.05733 | 0.834 |
34DAP/26DAP | 1.23718 | 1 |
51DAP/34DAP | 1.09939 | 0.883 |
52DAP/51DAP | 1.40526 | |
53DAP/52DAP | 1.04133 | 0.91 |
55DAP/53DAP | 1.08538 | 1 |
57DAP/55DAP | 1.15849 | 0.935 |
62DAP/57DAP | 1.1898 | 0.515 |
68DAP/62DAP | 1.7876 | 0.048 |
68DAP/14DAP | 1.34947 | 0.091 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89671 | 0.378 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.65295 | |
Mature Green Tomato/Ripe Tomato | 0.52533 | 0.051 |
Immature Eggplant/Mature Eggplant | 4.98654 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.32758 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.1424 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.1151 | 1 |
12-2/M82 | 1.27782 | |
12-4/M82 | 0.78876 | 0.619 |
1-3/M82 | 1.80162 | |
2-1-1/M82 | 0.91463 | 1 |
2-1/M82 | 0.56315 | |
2-6/M82 | 1.90921 | 0.364 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.66248 | |
4-1/M82 | 0.71326 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 2.47417 | 1 |
5-3/M82 | 0.50254 | 0.395 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.7241 | |
7-1/M82 | 0.71872 | |
7-2/M82 | 1.89333 | 0.385 |
9-3-2/M82 | 1.94185 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95217 | 1 |
IL2-6/WTpooled | 0.79588 | 0.348 |
IL7-5/WTpooled | 0.65759 | 1 |
IL7-3/WTpooled | 0.92373 | 1 |
IL12-4/WTpooled | 1.16034 | 1 |
IL1-4/WTpooled | 1.11578 | 1 |
WT/WTpooled | 1.04097 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.53068 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01744 | 1 |
DC3000/delta hrp 6h | 1.32954 | 1 |
DC3000/delta hrp 12h | 1.06804 | 1 |
DC3000/delta hrp 24h | 0.76823 | 0.042 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.97157 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10152 | 1 |
Exp 36h | 1.95797 | 0.693 |
Exp 60h | 1.56973 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99781 | 1 |
Var 0h | 0.63743 | 0.332 |
Var 12h I row2-row1 | 0.945 | 0.856 |
Var 12h NI row2-row1 | 1.25594 | 0.203 |
Var 36h I row2-row1 | 1.21385 | 0.339 |
Var 36h NI row2-row1 | 0.99654 | 0.791 |
Var 60h I row2-row1 | 0.89102 | 0.832 |
Var 60h NI row2-row1 | 0.63933 | 0.297 |
Time course 0hI-0hNI | 1.02872 | 0.867 |
Time course 12hI-12hNI | 1.12449 | 0.373 |
Time course 36hI-36hNI | 3.24121 | 0.004 |
Time course 60hI-60hNI | 4.56685 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.74031 | 0.409 |
transgenic ySAMdc/azygous control (breaker) | 0.57609 | 0.137 |
transgenic ySAMdc/azygous control (red) | 1.62314 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.39033 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.31182 | 0.307 |
Manapal/WT (break) | 0.83476 | 0.333 |
Manapal/WT (red) | 0.39264 | 0.181 |
|
|