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Expression of 1-1-4.2.17.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.612350.092
27DAP/17DAP1.310870.688
39DAP/27DAP1.600680.133
41DAP/39DAP1.021330.935
42DAP/41DAP1.117180.978
43DAP/42DAP0.943220.829
47DAP/43DAP0.946420.788
52DAP/47DAP0.870580.633
57DAP/52DAP1.253160.93

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.16670.085
17DAP/reference1.020140.717
27DAP/reference1.021560.909
39DAP/reference1.161740.218
41DAP/reference1.080040.552
42DAP/reference1.277830.001
43DAP/reference1.134090.252
47DAP/reference1.032150.773
52DAP/reference0.884860.131
57DAP/reference0.9310.176

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.138530.708
27DAP/17DAP0.849240.446
39DAP/27DAP1.288910.231
41DAP/39DAP1.296750.347
42DAP/41DAP0.806820.143
43DAP/42DAP0.884070.336
47DAP/43DAP1.084830.756
52DAP/47DAP0.978460.919
57DAP/52DAP1.12570.547
57DAP/7DAP1.08188N/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.125830.534
17DAP/reference1.070590.399
27DAP/reference1.414910.01
39DAP/reference1.110960.267
41DAP/reference1.27020.019
42DAP/reference1.779990.012
43DAP/reference1.268890.023
47DAP/reference1.192150.142
52DAP/reference1.440.028
57DAP/reference1.5970.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.158940.193
17DAP/reference1.145910.147
27DAP/reference1.240510.046
39DAP/reference0.938080.281
41DAP/reference1.063971
42DAP/reference1.482430.015
43DAP/reference1.846250.009
47DAP/reference2.082370.008
52DAP/reference0.895710.086
57DAP/reference1.502470.078

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.125840.149
17DAP/reference1.039480.72
27DAP/reference1.252830.033
39DAP/reference1.299860.01
41DAP/reference1.154470.089
42DAP/reference1.089280.391
43DAP/reference0.923540.102
47DAP/reference1.151660.01
52DAP/reference1.034140.946
57DAP/reference0.866710.109

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.358240.496
26DAP/20DAP1.057330.834
34DAP/26DAP1.237181
51DAP/34DAP1.099390.883
52DAP/51DAP1.40526N/A
53DAP/52DAP1.041330.91
55DAP/53DAP1.085381
57DAP/55DAP1.158490.935
62DAP/57DAP1.18980.515
68DAP/62DAP1.78760.048
68DAP/14DAP1.349470.091

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.896710.378

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.65295N/A
Mature Green Tomato/Ripe Tomato0.525330.051
Immature Eggplant/Mature Eggplant4.986540.05
Ripe Pepper/Ripe Tomato0.327580.224
Mature Eggplant/Ripe Tomato0.14241

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.11511
12-2/M821.27782N/A
12-4/M820.788760.619
1-3/M821.80162N/A
2-1-1/M820.914631
2-1/M820.56315N/A
2-6/M821.909210.364
3-2/M82N/AN/A
4-1-1/M820.66248N/A
4-1/M820.71326N/A
4-3-2/M82N/AN/A
4-3/M822.474171
5-3/M820.502540.395
6-2/M82N/AN/A
6-3/M821.7241N/A
7-1/M820.71872N/A
7-2/M821.893330.385
9-3-2/M821.94185N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.952171
IL2-6/WTpooled0.795880.348
IL7-5/WTpooled0.657591
IL7-3/WTpooled0.923731
IL12-4/WTpooled1.160341
IL1-4/WTpooled1.115781
WT/WTpooled1.040971

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.530680.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.017441
DC3000/delta hrp 6h1.329541
DC3000/delta hrp 12h1.068041
DC3000/delta hrp 24h0.768230.042

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.97157N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.101521
Exp 36h1.957970.693
Exp 60h1.569730.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997811
Var 0h0.637430.332
Var 12h I row2-row10.9450.856
Var 12h NI row2-row11.255940.203
Var 36h I row2-row11.213850.339
Var 36h NI row2-row10.996540.791
Var 60h I row2-row10.891020.832
Var 60h NI row2-row10.639330.297
Time course 0hI-0hNI1.028720.867
Time course 12hI-12hNI1.124490.373
Time course 36hI-36hNI3.241210.004
Time course 60hI-60hNI4.566850.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.740310.409
transgenic ySAMdc/azygous control (breaker)0.576090.137
transgenic ySAMdc/azygous control (red)1.623140.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.390330.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.311820.307
Manapal/WT (break)0.834760.333
Manapal/WT (red)0.392640.181