Tomato Functional Genomics Database (TFGD)

Expression of 1-1-4.2.18.3

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.90708	0.456
27DAP/17DAP	1.52932	1
39DAP/27DAP	1.71578	0.53
41DAP/39DAP	1.04082	0.929
42DAP/41DAP	0.69573	0.397
43DAP/42DAP	1.0312	0.937
47DAP/43DAP	0.69642	0.18
52DAP/47DAP	1.06933	0.92
57DAP/52DAP	1.30229	0.837

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94297	0.432
17DAP/reference	0.85575	0.147
27DAP/reference	0.79653	0.109
39DAP/reference	0.93663	0.467
41DAP/reference	0.87971	0.065
42DAP/reference	1.01495	1
43DAP/reference	0.87025	0.2
47DAP/reference	0.99088	0.568
52DAP/reference	0.90935	0.25
57DAP/reference	1.01571	0.952

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.22596	0.605
27DAP/17DAP	0.93788	0.782
39DAP/27DAP	0.99302	0.953
41DAP/39DAP	1.50821	0.014
42DAP/41DAP	0.92778	0.524
43DAP/42DAP	0.83627	0.197
47DAP/43DAP	1.1741	0.889
52DAP/47DAP	0.9673	0.899
57DAP/52DAP	1.22707	0.417
57DAP/7DAP	0.72338	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.23171	0.213
17DAP/reference	1.13995	0.269
27DAP/reference	1.37173	0.035
39DAP/reference	1.7719	0.006
41DAP/reference	1.24289	0.28
42DAP/reference	1.77844	0.011
43DAP/reference	1.48374	0.009
47DAP/reference	1.33655	0.149
52DAP/reference	1.48981	0.014
57DAP/reference	1.31665	0.024

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05594	0.933
17DAP/reference	1.0071	0.898
27DAP/reference	1.09161	0.552
39DAP/reference	1.44514	0.011
41DAP/reference	1.15736	0.301
42DAP/reference	1.12394	0.351
43DAP/reference	1.00705	0.814
47DAP/reference	1.1318	0.016
52DAP/reference	1.04671	0.559
57DAP/reference	1.01926	0.93

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.8857	0.065
17DAP/reference	1.08997	0.665
27DAP/reference	1.27171	0.057
39DAP/reference	1.31649	0.018
41DAP/reference	1.0542	0.916
42DAP/reference	1.20384	0.239
43DAP/reference	1.06323	0.634
47DAP/reference	1.03404	0.994
52DAP/reference	1.25586	0.341
57DAP/reference	1.33228	0.031

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.55443	0.611
26DAP/20DAP	1.00367	1
34DAP/26DAP	1.30888	0.819
51DAP/34DAP	1.57421	0.326
52DAP/51DAP	1.19096	0.722
53DAP/52DAP	0.82789	0.612
55DAP/53DAP	0.83029	0.43
57DAP/55DAP	1.10794	0.376
62DAP/57DAP	1.4037	0.35
68DAP/62DAP	1.072	0.872
68DAP/14DAP	1.05349	0.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.45119	0.092

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.32386	0.073
Mature Green Tomato/Ripe Tomato	1.70821	0.119
Immature Eggplant/Mature Eggplant	2.33483	0.05
Ripe Pepper/Ripe Tomato	2.51504	1
Mature Eggplant/Ripe Tomato	2.6592

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	0.78995
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	0.50449
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.10736	0.277
IL2-6/WTpooled	0.89367
IL7-5/WTpooled	1.23896	0.792
IL7-3/WTpooled	1.43149
IL12-4/WTpooled	1.05241	1
IL1-4/WTpooled	1.36236	0.426
WT/WTpooled	1.02232	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.94136	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.16781	0.921
DC3000/delta hrp 6h	1.10175	0.857
DC3000/delta hrp 12h	0.87114	1
DC3000/delta hrp 24h	3.809	0.026

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.23836	0.229
DC3000 delta B/DC3000 delta AB	1.19522	0.498

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.09059	1
Exp 36h	1.15879	0.693
Exp 60h	1.18431	0.215

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.06817	1
Var 0h	1.017	1
Var 12h I row2-row1	1.11642	0.506
Var 12h NI row2-row1	1.03035	1
Var 36h I row2-row1	0.99769	1
Var 36h NI row2-row1	0.88898	0.706
Var 60h I row2-row1	0.75468	0.439
Var 60h NI row2-row1	0.9105	0.63
Time course 0hI-0hNI	1.06333	0.574
Time course 12hI-12hNI	0.95778	0.581
Time course 36hI-36hNI	1.0893	0.722
Time course 60hI-60hNI	2.19674	0.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.87189	0.314
transgenic ySAMdc/azygous control (breaker)	0.7139	0.173
transgenic ySAMdc/azygous control (red)	1.01238	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.00707	0.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.9639	0.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.79167	0.172
Manapal/WT (break)	1.15723	1
Manapal/WT (red)	0.81328	0.274