Tomato Functional Genomics Database (TFGD)

Expression of 1-1-4.2.18.7

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.26625	0.709
27DAP/17DAP	0.85647	0.69
39DAP/27DAP	0.89377	0.512
41DAP/39DAP	1.48298	0.295
42DAP/41DAP	0.89829	0.774
43DAP/42DAP	1.03913	0.937
47DAP/43DAP	1.21325	0.463
52DAP/47DAP	1.17725	0.601
57DAP/52DAP	1.29882	0.912

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.79273	0.055
17DAP/reference	1.01743	0.606
27DAP/reference	1.08164	0.612
39DAP/reference	1.02307	0.842
41DAP/reference	0.99352	0.814
42DAP/reference	1.08443	0.032
43DAP/reference	1.34081	0.012
47DAP/reference	1.35039	0.004
52DAP/reference	1.45941	0.069
57DAP/reference	1.17969	0.094

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.07275	0.762
27DAP/17DAP	0.98543	0.943
39DAP/27DAP	1.05617	0.751
41DAP/39DAP	0.96776	0.959
42DAP/41DAP	0.89264	0.402
43DAP/42DAP	1.12923	0.627
47DAP/43DAP	1.08188	0.956
52DAP/47DAP	1.0385	0.915
57DAP/52DAP	0.93366	0.587
57DAP/7DAP	0.93779	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.03543	0.732
17DAP/reference	0.92192	0.094
27DAP/reference	0.97444	0.325
39DAP/reference	0.96803	0.23
41DAP/reference	0.85039	0.076
42DAP/reference	0.81822	0.013
43DAP/reference	1.00348	0.727
47DAP/reference	0.99193	1
52DAP/reference	1.0277	0.832
57DAP/reference	0.99042	0.589

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.89715	0.329
17DAP/reference	0.73162	0.004
27DAP/reference	0.76651	0.02
39DAP/reference	0.95869	0.381
41DAP/reference	0.8779	0.108
42DAP/reference	0.94532	0.321
43DAP/reference	0.98645	0.657
47DAP/reference	1.10947	0.218
52DAP/reference	0.91166	0.078
57DAP/reference	0.84909	0.05

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.90734	0.23
17DAP/reference	0.91504	0.348
27DAP/reference	1.25598	0.033
39DAP/reference	1.10556	0.12
41DAP/reference	0.95749	0.417
42DAP/reference	0.97626	0.671
43DAP/reference	1.02042	1
47DAP/reference	1.84605	0.005
52DAP/reference	1.45985	0.216
57DAP/reference	1.02139	0.888

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.3602	0.966
26DAP/20DAP	0.81017	0.317
34DAP/26DAP	1.20069	1
51DAP/34DAP	0.80312	0.083
52DAP/51DAP	1.04125	1
53DAP/52DAP	0.98263	0.897
55DAP/53DAP	1.13032	0.741
57DAP/55DAP	1.22556	0.854
62DAP/57DAP	0.85485	0.681
68DAP/62DAP	0.95039	0.787
68DAP/14DAP	1.68386	0.139

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.7244	0.046

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.51695	0.094
Mature Green Tomato/Ripe Tomato	0.71329	0.522
Immature Eggplant/Mature Eggplant	3.78772	0.05
Ripe Pepper/Ripe Tomato	0.4691	0.224
Mature Eggplant/Ripe Tomato	0.07653

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	0.98226	1
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	0.83725
9-3-2/M82	0.93186

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	N/A	N/A
IL1-4/WTpooled	N/A	N/A
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.93558	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.99653	1
DC3000/delta hrp 6h	1.00811	0.95
DC3000/delta hrp 12h	1.11632	1
DC3000/delta hrp 24h	1.04709	0.71

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	0.78667	0.529

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.99145	1
Exp 36h	0.89387	0.661
Exp 60h	0.89356	0.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.02547	1
Var 0h	1.13321	0.594
Var 12h I row2-row1	0.9893	1
Var 12h NI row2-row1	0.88459	0.82
Var 36h I row2-row1	1.02992	1
Var 36h NI row2-row1	1.14995	1
Var 60h I row2-row1	1.10767
Var 60h NI row2-row1	1.27942	0.904
Time course 0hI-0hNI	0.91069	0.152
Time course 12hI-12hNI	0.9604	0.618
Time course 36hI-36hNI	0.68629	0.023
Time course 60hI-60hNI	0.41618	0.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.94619	0.289
transgenic ySAMdc/azygous control (breaker)	0.65715	0.15
transgenic ySAMdc/azygous control (red)	1.78874	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.71989	0.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.52067	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.01889	1
Manapal/WT (break)	1.20089	1
Manapal/WT (red)	1.768	1