Expression of 1-1-4.2.19.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03108 | 0.975 |
27DAP/17DAP | 0.93249 | 0.863 |
39DAP/27DAP | 1.3588 | 0.219 |
41DAP/39DAP | 0.84997 | 0.552 |
42DAP/41DAP | 1.10993 | 0.938 |
43DAP/42DAP | 1.14413 | 1 |
47DAP/43DAP | 2.17151 | 0.746 |
52DAP/47DAP | 1.12122 | 0.886 |
57DAP/52DAP | 0.98354 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86421 | 0.118 |
17DAP/reference | 1.06524 | 0.294 |
27DAP/reference | 1.03932 | 0.58 |
39DAP/reference | 0.99192 | 0.885 |
41DAP/reference | 1.03487 | 0.624 |
42DAP/reference | 0.95639 | 0.188 |
43DAP/reference | 0.9707 | 0.653 |
47DAP/reference | 0.96059 | 0.279 |
52DAP/reference | 0.86133 | 0.152 |
57DAP/reference | 0.90488 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82476 | 0.35 |
27DAP/17DAP | 1.15875 | 0.494 |
39DAP/27DAP | 1.4801 | 0.378 |
41DAP/39DAP | 1.14133 | 0.887 |
42DAP/41DAP | 0.81807 | 0.603 |
43DAP/42DAP | 0.83543 | 0.022 |
47DAP/43DAP | 1.34192 | 0.475 |
52DAP/47DAP | 1.01115 | 0.901 |
57DAP/52DAP | 1.1515 | 0.552 |
57DAP/7DAP | 1.10374 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90202 | 0.146 |
17DAP/reference | 0.84377 | 0.108 |
27DAP/reference | 0.92924 | 0.231 |
39DAP/reference | 1.26171 | 0.007 |
41DAP/reference | 0.96475 | 0.431 |
42DAP/reference | 1.05809 | 0.889 |
43DAP/reference | 1.01035 | 1 |
47DAP/reference | 1.07131 | 0.561 |
52DAP/reference | 1.11551 | 0.036 |
57DAP/reference | 1.12417 | 0.137 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89138 | 0.096 |
17DAP/reference | 0.93326 | 0.279 |
27DAP/reference | 0.8564 | 0.155 |
39DAP/reference | 0.89323 | 0.132 |
41DAP/reference | 0.89538 | 0.152 |
42DAP/reference | 0.93132 | 0.261 |
43DAP/reference | 0.83611 | 0.039 |
47DAP/reference | 0.97159 | 0.423 |
52DAP/reference | 0.92815 | 0.22 |
57DAP/reference | 0.90721 | 0.18 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82803 | 0.092 |
17DAP/reference | 0.99958 | 0.763 |
27DAP/reference | 0.88355 | 0.089 |
39DAP/reference | 0.95478 | 0.393 |
41DAP/reference | 0.87387 | 0.07 |
42DAP/reference | 0.96604 | 0.552 |
43DAP/reference | 0.88613 | 0.206 |
47DAP/reference | 0.96928 | 0.494 |
52DAP/reference | 0.9475 | 0.551 |
57DAP/reference | 0.82718 | 0.095 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.34156 | 0.966 |
26DAP/20DAP | 1.73894 | |
34DAP/26DAP | 1.59254 | 0.542 |
51DAP/34DAP | 0.79027 | |
52DAP/51DAP | 0.93494 | 1 |
53DAP/52DAP | 1.12151 | 0.91 |
55DAP/53DAP | 1.00814 | 1 |
57DAP/55DAP | 1.25645 | 0.881 |
62DAP/57DAP | 1.10284 | 1 |
68DAP/62DAP | 0.77696 | 0.464 |
68DAP/14DAP | 0.77628 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.82135 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 8.20498 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.81236 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.33421 | 0.505 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.24264 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.90391 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.5356 | |
5-3/M82 | 1.05626 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.80951 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.2232 | 0.277 |
IL2-6/WTpooled | 1.27751 | 0.46 |
IL7-5/WTpooled | 1.62458 | 1 |
IL7-3/WTpooled | 0.7093 | 0.294 |
IL12-4/WTpooled | 1.22971 | 0.695 |
IL1-4/WTpooled | 1.37877 | 1 |
WT/WTpooled | 0.92035 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02415 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02566 | 0.894 |
DC3000/delta hrp 6h | 0.85482 | 0.95 |
DC3000/delta hrp 12h | 0.9002 | 1 |
DC3000/delta hrp 24h | 1.05514 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 4.62481 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97553 | 1 |
Exp 36h | 1.14049 | 1 |
Exp 60h | 0.97256 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.10871 | 1 |
Var 0h | 0.92466 | 1 |
Var 12h I row2-row1 | 1.00135 | 1 |
Var 12h NI row2-row1 | 1.02808 | 1 |
Var 36h I row2-row1 | 1.21255 | 0.908 |
Var 36h NI row2-row1 | 0.92892 | |
Var 60h I row2-row1 | 0.96164 | 0.952 |
Var 60h NI row2-row1 | 1.08485 | 0.904 |
Time course 0hI-0hNI | 1.03063 | 1 |
Time course 12hI-12hNI | 2.29487 | 0.256 |
Time course 36hI-36hNI | 1.02444 | 0.975 |
Time course 60hI-60hNI | 2.19145 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04999 | 0.384 |
transgenic ySAMdc/azygous control (breaker) | 1.12369 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00494 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06801 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1932 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.78899 | 0.216 |
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