Expression of 1-1-4.2.19.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.031080.975
27DAP/17DAP0.932490.863
39DAP/27DAP1.35880.219
41DAP/39DAP0.849970.552
42DAP/41DAP1.109930.938
43DAP/42DAP1.144131
47DAP/43DAP2.171510.746
52DAP/47DAP1.121220.886
57DAP/52DAP0.983540.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.864210.118
17DAP/reference1.065240.294
27DAP/reference1.039320.58
39DAP/reference0.991920.885
41DAP/reference1.034870.624
42DAP/reference0.956390.188
43DAP/reference0.97070.653
47DAP/reference0.960590.279
52DAP/reference0.861330.152
57DAP/reference0.904880.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.824760.35
27DAP/17DAP1.158750.494
39DAP/27DAP1.48010.378
41DAP/39DAP1.141330.887
42DAP/41DAP0.818070.603
43DAP/42DAP0.835430.022
47DAP/43DAP1.341920.475
52DAP/47DAP1.011150.901
57DAP/52DAP1.15150.552
57DAP/7DAP1.103741

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902020.146
17DAP/reference0.843770.108
27DAP/reference0.929240.231
39DAP/reference1.261710.007
41DAP/reference0.964750.431
42DAP/reference1.058090.889
43DAP/reference1.010351
47DAP/reference1.071310.561
52DAP/reference1.115510.036
57DAP/reference1.124170.137

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.891380.096
17DAP/reference0.933260.279
27DAP/reference0.85640.155
39DAP/reference0.893230.132
41DAP/reference0.895380.152
42DAP/reference0.931320.261
43DAP/reference0.836110.039
47DAP/reference0.971590.423
52DAP/reference0.928150.22
57DAP/reference0.907210.18

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.828030.092
17DAP/reference0.999580.763
27DAP/reference0.883550.089
39DAP/reference0.954780.393
41DAP/reference0.873870.07
42DAP/reference0.966040.552
43DAP/reference0.886130.206
47DAP/reference0.969280.494
52DAP/reference0.94750.551
57DAP/reference0.827180.095

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.341560.966
26DAP/20DAP1.73894
34DAP/26DAP1.592540.542
51DAP/34DAP0.79027
52DAP/51DAP0.934941
53DAP/52DAP1.121510.91
55DAP/53DAP1.008141
57DAP/55DAP1.256450.881
62DAP/57DAP1.102841
68DAP/62DAP0.776960.464
68DAP/14DAP0.776280.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.821350.285

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant8.20498
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.81236
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.334210.505
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.24264
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M820.90391
4-3-2/M82N/AN/A
4-3/M820.5356
5-3/M821.056261
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.80951
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.22320.277
IL2-6/WTpooled1.277510.46
IL7-5/WTpooled1.624581
IL7-3/WTpooled0.70930.294
IL12-4/WTpooled1.229710.695
IL1-4/WTpooled1.378771
WT/WTpooled0.920351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.024151

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.025660.894
DC3000/delta hrp 6h0.854820.95
DC3000/delta hrp 12h0.90021
DC3000/delta hrp 24h1.055140.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB4.62481
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.975531
Exp 36h1.140491
Exp 60h0.972561

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.108711
Var 0h0.924661
Var 12h I row2-row11.001351
Var 12h NI row2-row11.028081
Var 36h I row2-row11.212550.908
Var 36h NI row2-row10.92892
Var 60h I row2-row10.961640.952
Var 60h NI row2-row11.084850.904
Time course 0hI-0hNI1.030631
Time course 12hI-12hNI2.294870.256
Time course 36hI-36hNI1.024440.975
Time course 60hI-60hNI2.191450.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.049990.384
transgenic ySAMdc/azygous control (breaker)1.123691
transgenic ySAMdc/azygous control (red)1.004941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.068010.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.19321

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.788990.216