Expression of 1-1-4.2.2.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.183920.947
27DAP/17DAP1.064570.892
39DAP/27DAP1.313160.329
41DAP/39DAP1.065090.914
42DAP/41DAP1.110290.908
43DAP/42DAP1.008210.948
47DAP/43DAP1.107730.689
52DAP/47DAP1.483970.451
57DAP/52DAP1.588430.567

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.892250.035
17DAP/reference0.994750.858
27DAP/reference1.186320.415
39DAP/reference1.344930.013
41DAP/reference1.044120.421
42DAP/reference1.160260.02
43DAP/reference1.378110.021
47DAP/reference1.456240.001
52DAP/reference1.219790.43
57DAP/reference1.340920.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.897250.509
27DAP/17DAP1.114670.905
39DAP/27DAP0.918370.556
41DAP/39DAP1.01441
42DAP/41DAP1.291850.087
43DAP/42DAP1.044940.746
47DAP/43DAP1.022220.951
52DAP/47DAP0.96930.898
57DAP/52DAP1.208870.451
57DAP/7DAP0.73418

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.350170.072
17DAP/reference1.152590.244
27DAP/reference1.117410.371
39DAP/reference1.357450.016
41DAP/reference1.332230.032
42DAP/reference1.293570.011
43DAP/reference1.240420.325
47DAP/reference1.183350.07
52DAP/reference1.254360.038
57DAP/reference1.173970.356

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.957790.564
17DAP/reference1.236630.271
27DAP/reference1.044971
39DAP/reference1.185210.146
41DAP/reference1.150240.096
42DAP/reference1.091090.38
43DAP/reference0.961650.494
47DAP/reference1.119040.092
52DAP/reference1.007251
57DAP/reference0.970410.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.991860.653
17DAP/reference1.015041
27DAP/reference1.229530.115
39DAP/reference1.197530.116
41DAP/reference1.054530.455
42DAP/reference1.015051
43DAP/reference1.373460.044
47DAP/reference1.253920.032
52DAP/reference1.447510.031
57DAP/reference1.33220.057

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.183220.966
26DAP/20DAP1.596330.226
34DAP/26DAP0.97671
51DAP/34DAP1.433310.565
52DAP/51DAP0.966621
53DAP/52DAP1.147650.608
55DAP/53DAP0.773470.445
57DAP/55DAP0.93860.754
62DAP/57DAP0.673420.28
68DAP/62DAP1.378020.178
68DAP/14DAP1.265450.714

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.540440.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.218110.068
Mature Green Tomato/Ripe Tomato0.667560.042
Immature Eggplant/Mature Eggplant0.934780.448
Ripe Pepper/Ripe Tomato0.671720.293
Mature Eggplant/Ripe Tomato0.699940.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.929850.944
1-1-2/M821.105910.977
12-2/M820.687510.692
12-4/M820.858981
1-3/M821.335310.479
2-1-1/M820.977911
2-1/M820.85312
2-6/M821.007431
3-2/M821.21187
4-1-1/M821.362890.876
4-1/M82N/AN/A
4-3-2/M821.9523
4-3/M821.422850.268
5-3/M821.141421
6-2/M821.361880.253
6-3/M821.004981
7-1/M821.10352
7-2/M821.22278
9-3-2/M821.09389

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.748930.348
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.987691
IL12-4/WTpooled0.935111
IL1-4/WTpooled1.01494
WT/WTpooled0.97891

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.926391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.362070.921
DC3000/delta hrp 6h0.91280.95
DC3000/delta hrp 12h0.881791
DC3000/delta hrp 24h1.324520.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.25744
DC3000 delta B/DC3000 delta AB0.854130.028

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.984181
Exp 36h0.626070.406
Exp 60h0.633410.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.97291
Var 0h1.234561
Var 12h I row2-row10.902390.627
Var 12h NI row2-row11.33790.649
Var 36h I row2-row10.703741
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row10.906180.293
Var 60h NI row2-row10.985491
Time course 0hI-0hNI0.967120.849
Time course 12hI-12hNI0.852030.212
Time course 36hI-36hNI0.801960.024
Time course 60hI-60hNI0.454630.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.029960.318
transgenic ySAMdc/azygous control (breaker)0.83360.173
transgenic ySAMdc/azygous control (red)1.011661

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.024060.723

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.004461

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.643550.172
Manapal/WT (break)0.755360.297
Manapal/WT (red)1.088160.413