Expression of 1-1-4.2.2.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18392 | 0.947 |
27DAP/17DAP | 1.06457 | 0.892 |
39DAP/27DAP | 1.31316 | 0.329 |
41DAP/39DAP | 1.06509 | 0.914 |
42DAP/41DAP | 1.11029 | 0.908 |
43DAP/42DAP | 1.00821 | 0.948 |
47DAP/43DAP | 1.10773 | 0.689 |
52DAP/47DAP | 1.48397 | 0.451 |
57DAP/52DAP | 1.58843 | 0.567 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89225 | 0.035 |
17DAP/reference | 0.99475 | 0.858 |
27DAP/reference | 1.18632 | 0.415 |
39DAP/reference | 1.34493 | 0.013 |
41DAP/reference | 1.04412 | 0.421 |
42DAP/reference | 1.16026 | 0.02 |
43DAP/reference | 1.37811 | 0.021 |
47DAP/reference | 1.45624 | 0.001 |
52DAP/reference | 1.21979 | 0.43 |
57DAP/reference | 1.34092 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89725 | 0.509 |
27DAP/17DAP | 1.11467 | 0.905 |
39DAP/27DAP | 0.91837 | 0.556 |
41DAP/39DAP | 1.0144 | 1 |
42DAP/41DAP | 1.29185 | 0.087 |
43DAP/42DAP | 1.04494 | 0.746 |
47DAP/43DAP | 1.02222 | 0.951 |
52DAP/47DAP | 0.9693 | 0.898 |
57DAP/52DAP | 1.20887 | 0.451 |
57DAP/7DAP | 0.73418 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35017 | 0.072 |
17DAP/reference | 1.15259 | 0.244 |
27DAP/reference | 1.11741 | 0.371 |
39DAP/reference | 1.35745 | 0.016 |
41DAP/reference | 1.33223 | 0.032 |
42DAP/reference | 1.29357 | 0.011 |
43DAP/reference | 1.24042 | 0.325 |
47DAP/reference | 1.18335 | 0.07 |
52DAP/reference | 1.25436 | 0.038 |
57DAP/reference | 1.17397 | 0.356 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95779 | 0.564 |
17DAP/reference | 1.23663 | 0.271 |
27DAP/reference | 1.04497 | 1 |
39DAP/reference | 1.18521 | 0.146 |
41DAP/reference | 1.15024 | 0.096 |
42DAP/reference | 1.09109 | 0.38 |
43DAP/reference | 0.96165 | 0.494 |
47DAP/reference | 1.11904 | 0.092 |
52DAP/reference | 1.00725 | 1 |
57DAP/reference | 0.97041 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99186 | 0.653 |
17DAP/reference | 1.01504 | 1 |
27DAP/reference | 1.22953 | 0.115 |
39DAP/reference | 1.19753 | 0.116 |
41DAP/reference | 1.05453 | 0.455 |
42DAP/reference | 1.01505 | 1 |
43DAP/reference | 1.37346 | 0.044 |
47DAP/reference | 1.25392 | 0.032 |
52DAP/reference | 1.44751 | 0.031 |
57DAP/reference | 1.3322 | 0.057 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.18322 | 0.966 |
26DAP/20DAP | 1.59633 | 0.226 |
34DAP/26DAP | 0.9767 | 1 |
51DAP/34DAP | 1.43331 | 0.565 |
52DAP/51DAP | 0.96662 | 1 |
53DAP/52DAP | 1.14765 | 0.608 |
55DAP/53DAP | 0.77347 | 0.445 |
57DAP/55DAP | 0.9386 | 0.754 |
62DAP/57DAP | 0.67342 | 0.28 |
68DAP/62DAP | 1.37802 | 0.178 |
68DAP/14DAP | 1.26545 | 0.714 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.54044 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.21811 | 0.068 |
Mature Green Tomato/Ripe Tomato | 0.66756 | 0.042 |
Immature Eggplant/Mature Eggplant | 0.93478 | 0.448 |
Ripe Pepper/Ripe Tomato | 0.67172 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.69994 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92985 | 0.944 |
1-1-2/M82 | 1.10591 | 0.977 |
12-2/M82 | 0.68751 | 0.692 |
12-4/M82 | 0.85898 | 1 |
1-3/M82 | 1.33531 | 0.479 |
2-1-1/M82 | 0.97791 | 1 |
2-1/M82 | 0.85312 | |
2-6/M82 | 1.00743 | 1 |
3-2/M82 | 1.21187 | |
4-1-1/M82 | 1.36289 | 0.876 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.9523 | |
4-3/M82 | 1.42285 | 0.268 |
5-3/M82 | 1.14142 | 1 |
6-2/M82 | 1.36188 | 0.253 |
6-3/M82 | 1.00498 | 1 |
7-1/M82 | 1.10352 | |
7-2/M82 | 1.22278 | |
9-3-2/M82 | 1.09389 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.74893 | 0.348 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.98769 | 1 |
IL12-4/WTpooled | 0.93511 | 1 |
IL1-4/WTpooled | 1.01494 | |
WT/WTpooled | 0.9789 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.92639 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.36207 | 0.921 |
DC3000/delta hrp 6h | 0.9128 | 0.95 |
DC3000/delta hrp 12h | 0.88179 | 1 |
DC3000/delta hrp 24h | 1.32452 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.25744 | |
DC3000 delta B/DC3000 delta AB | 0.85413 | 0.028 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98418 | 1 |
Exp 36h | 0.62607 | 0.406 |
Exp 60h | 0.63341 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9729 | 1 |
Var 0h | 1.23456 | 1 |
Var 12h I row2-row1 | 0.90239 | 0.627 |
Var 12h NI row2-row1 | 1.3379 | 0.649 |
Var 36h I row2-row1 | 0.70374 | 1 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | 0.90618 | 0.293 |
Var 60h NI row2-row1 | 0.98549 | 1 |
Time course 0hI-0hNI | 0.96712 | 0.849 |
Time course 12hI-12hNI | 0.85203 | 0.212 |
Time course 36hI-36hNI | 0.80196 | 0.024 |
Time course 60hI-60hNI | 0.45463 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02996 | 0.318 |
transgenic ySAMdc/azygous control (breaker) | 0.8336 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.01166 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02406 | 0.723 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.00446 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.64355 | 0.172 |
Manapal/WT (break) | 0.75536 | 0.297 |
Manapal/WT (red) | 1.08816 | 0.413 |
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