Tomato Functional Genomics Database (TFGD)

Expression of 1-1-4.2.20.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.94392	0.722
27DAP/17DAP	1.61186	0.883
39DAP/27DAP	1.53243	0.374
41DAP/39DAP	0.71778	0.199
42DAP/41DAP	1.39963	0.802
43DAP/42DAP	1.46369	0.937
47DAP/43DAP	1.02212	0.949
52DAP/47DAP	1.12231	0.757
57DAP/52DAP	1.14868	0.971

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.79848	0.027
17DAP/reference	0.98187	0.701
27DAP/reference	0.98898	0.741
39DAP/reference	1.04118	0.465
41DAP/reference	0.98703	0.814
42DAP/reference	0.90725	0.095
43DAP/reference	0.97769	0.708
47DAP/reference	0.87885	0.148
52DAP/reference	0.90573	0.237
57DAP/reference	1.04422	0.724

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.57312	0.65
27DAP/17DAP	1.28718	0.943
39DAP/27DAP	1.06001	0.811
41DAP/39DAP	0.91869	0.793
42DAP/41DAP	0.93103	0.717
43DAP/42DAP	1.01616	0.902
47DAP/43DAP	1.10339	0.678
52DAP/47DAP	0.83445	0.157
57DAP/52DAP	1.30618	0.825
57DAP/7DAP	1.11806

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98711	0.613
17DAP/reference	0.74027	0.012
27DAP/reference	0.78995	0.051
39DAP/reference	0.86636	0.095
41DAP/reference	0.82641	0.06
42DAP/reference	0.74671	0.014
43DAP/reference	0.8281	0.056
47DAP/reference	0.83253	0.168
52DAP/reference	0.86133	0.072
57DAP/reference	0.81924	0.029

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.04643	0.926
17DAP/reference	0.98625	0.673
27DAP/reference	0.9721	0.519
39DAP/reference	0.98832	0.586
41DAP/reference	1.10098	0.439
42DAP/reference	0.97106	0.482
43DAP/reference	1.56588	0.042
47DAP/reference	1.25979	0.016
52DAP/reference	0.98223	0.537
57DAP/reference	1.17619	0.127

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96495	0.566
17DAP/reference	0.99488	0.763
27DAP/reference	0.78363	0.053
39DAP/reference	0.83431	0.063
41DAP/reference	0.88014	0.167
42DAP/reference	0.81204	0.172
43DAP/reference	0.85127	0.066
47DAP/reference	1.0901	0.251
52DAP/reference	0.6779	0.066
57DAP/reference	0.79772	0.036

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.22288	0.586
26DAP/20DAP	1.51589	0.567
34DAP/26DAP	0.76316	0.256
51DAP/34DAP	1.19533	0.785
52DAP/51DAP	1.14417	0.689
53DAP/52DAP	0.92963	0.776
55DAP/53DAP	0.72498	0.43
57DAP/55DAP	0.65564	0.165
62DAP/57DAP	0.95915	0.994
68DAP/62DAP	1.27664	0.737
68DAP/14DAP	1.39062	0.739

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.79005	0.358

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.82331	0.165
Immature Eggplant/Mature Eggplant	5.67407
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	1.13423

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	1.09317	0.563
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	1.61447
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	0.91581	0.419
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	1.90426

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.25231
IL12-4/WTpooled	0.93911
IL1-4/WTpooled	1.56168	1
WT/WTpooled	1.01666

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.81901
DC3000/delta hrp 6h	1.02982	0.95
DC3000/delta hrp 12h	1.32731	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.20572	1
Exp 36h	1.46956	0.693
Exp 60h	1.34129	0.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.93027	1
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	0.62133
Var 36h I row2-row1	0.9997
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	0.39878	1
Time course 0hI-0hNI	1.09177	0.102
Time course 12hI-12hNI	0.7465	0.501
Time course 36hI-36hNI	1.23327	0.035
Time course 60hI-60hNI	2.16061	0.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.11014	0.273
transgenic ySAMdc/azygous control (breaker)	0.81187	0.15
transgenic ySAMdc/azygous control (red)	1.25528	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.0226	0.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.78782	0.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.91333	1
Manapal/WT (break)	0.80412	1
Manapal/WT (red)	0.97707	0.728