Expression of 1-1-4.2.20.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.437720.291
27DAP/17DAP1.467150.474
39DAP/27DAP1.667430.143
41DAP/39DAP0.668930.097
42DAP/41DAP0.49850.397
43DAP/42DAP0.745550.391
47DAP/43DAP1.263240.438
52DAP/47DAP1.107280.801
57DAP/52DAP1.130710.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.267650.101
17DAP/reference1.50520.08
27DAP/reference1.917680.011
39DAP/reference1.692010.014
41DAP/reference1.873440.012
42DAP/reference0.90430.012
43DAP/reference0.82590.042
47DAP/reference1.089960.627
52DAP/reference1.013181
57DAP/reference1.232150.091

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.648010.077
27DAP/17DAP1.618830.071
39DAP/27DAP0.791990.283
41DAP/39DAP2.126620.727
42DAP/41DAP0.803970.269
43DAP/42DAP0.69710.058
47DAP/43DAP0.761130.022
52DAP/47DAP1.405510.221
57DAP/52DAP1.288120.119
57DAP/7DAP1.106811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.569780.03
17DAP/reference1.080360.574
27DAP/reference1.067680.664
39DAP/reference1.159080.175
41DAP/reference1.311290.02
42DAP/reference1.105050.308
43DAP/reference0.871140.023
47DAP/reference1.910310.02
52DAP/reference0.999060.802
57DAP/reference0.898670.097

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.140990.438
17DAP/reference1.044261
27DAP/reference2.234050.013
39DAP/reference1.870040.011
41DAP/reference1.201710.084
42DAP/reference2.411090.007
43DAP/reference1.496340.173
47DAP/reference1.756910.009
52DAP/reference2.184610.006
57DAP/reference0.927640.318

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.948380.197
17DAP/reference0.86060.165
27DAP/reference1.219290.065
39DAP/reference1.000620.819
41DAP/reference0.91670.026
42DAP/reference0.739410.025
43DAP/reference0.716810.017
47DAP/reference0.90510.286
52DAP/reference0.870320.351
57DAP/reference1.574190.081

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.165320.966
26DAP/20DAP2.441770.098
34DAP/26DAP0.713480.21
51DAP/34DAP0.561790.058
52DAP/51DAP1.083370.606
53DAP/52DAP0.949260.79
55DAP/53DAP0.723370.144
57DAP/55DAP1.225290.666
62DAP/57DAP1.367050.006
68DAP/62DAP1.601890.097
68DAP/14DAP2.226350.029

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.206350.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.97080.726
Mature Green Tomato/Ripe Tomato2.917280.026
Immature Eggplant/Mature Eggplant0.825190.086
Ripe Pepper/Ripe Tomato1.109151
Mature Eggplant/Ripe Tomato2.27520.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.895080.736
1-1-2/M821.05531
12-2/M820.86140.535
12-4/M820.821930.358
1-3/M821.709730.248
2-1-1/M820.773330.565
2-1/M820.766670.345
2-6/M820.622140.501
3-2/M820.901680.752
4-1-1/M820.784641
4-1/M821.04447
4-3-2/M820.669620.412
4-3/M820.909591
5-3/M821.133411
6-2/M82N/AN/A
6-3/M821.111071
7-1/M821.31512
7-2/M820.994881
9-3-2/M820.84846

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.05128
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.07336
IL7-3/WTpooled1.301991
IL12-4/WTpooled0.806191
IL1-4/WTpooled0.987850.834
WT/WTpooled1.117920.957

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.119260.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.068920.894
DC3000/delta hrp 6h1.086521
DC3000/delta hrp 12h0.849091
DC3000/delta hrp 24h1.74020.028

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.22460.145
DC3000 delta B/DC3000 delta AB1.0480.655

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.998561
Exp 36h1.176771
Exp 60h1.125391

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983181
Var 0hN/AN/A
Var 12h I row2-row11.365470.544
Var 12h NI row2-row10.997481
Var 36h I row2-row11.216010.601
Var 36h NI row2-row11.416031
Var 60h I row2-row10.749630.292
Var 60h NI row2-row11.062760.904
Time course 0hI-0hNI1.011671
Time course 12hI-12hNI0.96170.739
Time course 36hI-36hNI0.810440.025
Time course 60hI-60hNI0.801890.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.092660.654
transgenic ySAMdc/azygous control (breaker)0.599080.125
transgenic ySAMdc/azygous control (red)0.963161

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.327340.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.677730.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.93551
Manapal/WT (break)0.705280.299
Manapal/WT (red)1.123631