Expression of 1-1-4.2.4.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06558 | 0.891 |
27DAP/17DAP | 1.27765 | 0.755 |
39DAP/27DAP | 0.81239 | 0.399 |
41DAP/39DAP | 1.43199 | 0.423 |
42DAP/41DAP | 1.14724 | 0.974 |
43DAP/42DAP | 1.15937 | 0.985 |
47DAP/43DAP | 1.18061 | 0.733 |
52DAP/47DAP | 1.07454 | 0.989 |
57DAP/52DAP | 1.10425 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02616 | 0.994 |
17DAP/reference | 1.01332 | 0.696 |
27DAP/reference | 0.92345 | 0.327 |
39DAP/reference | 0.91815 | 0.267 |
41DAP/reference | 0.8653 | 0.114 |
42DAP/reference | 0.91872 | 0.088 |
43DAP/reference | 1.09427 | 0.36 |
47DAP/reference | 0.93343 | 0.127 |
52DAP/reference | 0.89765 | 0.167 |
57DAP/reference | 0.88872 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92007 | 0.299 |
27DAP/17DAP | 1.00429 | 0.995 |
39DAP/27DAP | 1.04226 | 0.626 |
41DAP/39DAP | 1.08136 | 0.656 |
42DAP/41DAP | 0.99647 | 0.894 |
43DAP/42DAP | 1.06514 | 0.351 |
47DAP/43DAP | 0.98818 | 0.939 |
52DAP/47DAP | 1.03561 | 0.851 |
57DAP/52DAP | 0.99246 | 0.833 |
57DAP/7DAP | 0.96961 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0732 | 0.638 |
17DAP/reference | 0.96009 | 0.389 |
27DAP/reference | 0.87713 | 0.325 |
39DAP/reference | 1.1116 | 0.267 |
41DAP/reference | 1.24747 | 0.28 |
42DAP/reference | 1.24206 | 0.076 |
43DAP/reference | 1.15736 | 0.408 |
47DAP/reference | 0.91572 | 0.222 |
52DAP/reference | 1.16348 | 0.086 |
57DAP/reference | 1.07149 | 0.5 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20836 | 0.113 |
17DAP/reference | 1.01101 | 0.851 |
27DAP/reference | 0.99526 | 0.711 |
39DAP/reference | 0.81643 | 0.025 |
41DAP/reference | 0.86808 | 0.063 |
42DAP/reference | 0.90342 | 0.089 |
43DAP/reference | 0.83046 | 0.125 |
47DAP/reference | 0.99554 | 0.678 |
52DAP/reference | 0.76568 | 0.014 |
57DAP/reference | 0.84017 | 0.046 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09904 | 0.864 |
17DAP/reference | 0.98315 | 0.739 |
27DAP/reference | 1.03736 | 0.777 |
39DAP/reference | 0.96936 | 0.643 |
41DAP/reference | 1.06884 | 1 |
42DAP/reference | 0.84637 | 0.134 |
43DAP/reference | 1.18934 | 0.459 |
47DAP/reference | 1.06181 | 0.574 |
52DAP/reference | 1.12675 | 0.443 |
57DAP/reference | 0.93504 | 0.326 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00943 | 1 |
26DAP/20DAP | 1.00547 | 1 |
34DAP/26DAP | 0.91997 | 0.399 |
51DAP/34DAP | 1.03585 | 0.795 |
52DAP/51DAP | 0.87886 | 1 |
53DAP/52DAP | 1.05371 | 0.819 |
55DAP/53DAP | 0.94636 | 0.389 |
57DAP/55DAP | 1.18128 | 0.34 |
62DAP/57DAP | 0.77805 | 0.162 |
68DAP/62DAP | 1.19809 | 0.635 |
68DAP/14DAP | 1.35792 | 0.694 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.79892 | 0.036 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.96592 | 0.71 |
Mature Green Tomato/Ripe Tomato | 1.41406 | 0.478 |
Immature Eggplant/Mature Eggplant | 1.04289 | 0.379 |
Ripe Pepper/Ripe Tomato | 2.72275 | 0.256 |
Mature Eggplant/Ripe Tomato | 2.58471 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.94821 | 1 |
12-2/M82 | 0.98753 | |
12-4/M82 | 0.62514 | 0.282 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.72373 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.19371 | |
4-3-2/M82 | 0.80161 | 1 |
4-3/M82 | 1.03678 | 1 |
5-3/M82 | 0.98992 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.16541 | |
7-1/M82 | 0.86671 | |
7-2/M82 | 1.00058 | |
9-3-2/M82 | 0.9457 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.69487 | 0.321 |
IL2-6/WTpooled | 2.21101 | 0.409 |
IL7-5/WTpooled | 1.21986 | 1 |
IL7-3/WTpooled | 0.58265 | 0.294 |
IL12-4/WTpooled | 1.59761 | 0.839 |
IL1-4/WTpooled | 1.1318 | 1 |
WT/WTpooled | 1.03623 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89928 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0786 | 0.921 |
DC3000/delta hrp 6h | 1.04646 | 1 |
DC3000/delta hrp 12h | 1.12719 | 1 |
DC3000/delta hrp 24h | 1.30963 | 0.065 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05313 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.00916 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.19523 | 1 |
Exp 60h | 1.07051 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99808 | |
Var 0h | 0.9942 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | 1.56266 | |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08193 | 0.292 |
transgenic ySAMdc/azygous control (breaker) | 1.01085 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93699 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99528 | 0.757 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.86125 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98328 | 1 |
Manapal/WT (break) | 0.95474 | 1 |
Manapal/WT (red) | 1.00471 | 1 |
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