Expression of 1-1-4.2.4.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.065580.891
27DAP/17DAP1.277650.755
39DAP/27DAP0.812390.399
41DAP/39DAP1.431990.423
42DAP/41DAP1.147240.974
43DAP/42DAP1.159370.985
47DAP/43DAP1.180610.733
52DAP/47DAP1.074540.989
57DAP/52DAP1.104250.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.026160.994
17DAP/reference1.013320.696
27DAP/reference0.923450.327
39DAP/reference0.918150.267
41DAP/reference0.86530.114
42DAP/reference0.918720.088
43DAP/reference1.094270.36
47DAP/reference0.933430.127
52DAP/reference0.897650.167
57DAP/reference0.888720.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.920070.299
27DAP/17DAP1.004290.995
39DAP/27DAP1.042260.626
41DAP/39DAP1.081360.656
42DAP/41DAP0.996470.894
43DAP/42DAP1.065140.351
47DAP/43DAP0.988180.939
52DAP/47DAP1.035610.851
57DAP/52DAP0.992460.833
57DAP/7DAP0.969611

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.07320.638
17DAP/reference0.960090.389
27DAP/reference0.877130.325
39DAP/reference1.11160.267
41DAP/reference1.247470.28
42DAP/reference1.242060.076
43DAP/reference1.157360.408
47DAP/reference0.915720.222
52DAP/reference1.163480.086
57DAP/reference1.071490.5

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.208360.113
17DAP/reference1.011010.851
27DAP/reference0.995260.711
39DAP/reference0.816430.025
41DAP/reference0.868080.063
42DAP/reference0.903420.089
43DAP/reference0.830460.125
47DAP/reference0.995540.678
52DAP/reference0.765680.014
57DAP/reference0.840170.046

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.099040.864
17DAP/reference0.983150.739
27DAP/reference1.037360.777
39DAP/reference0.969360.643
41DAP/reference1.068841
42DAP/reference0.846370.134
43DAP/reference1.189340.459
47DAP/reference1.061810.574
52DAP/reference1.126750.443
57DAP/reference0.935040.326

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.009431
26DAP/20DAP1.005471
34DAP/26DAP0.919970.399
51DAP/34DAP1.035850.795
52DAP/51DAP0.878861
53DAP/52DAP1.053710.819
55DAP/53DAP0.946360.389
57DAP/55DAP1.181280.34
62DAP/57DAP0.778050.162
68DAP/62DAP1.198090.635
68DAP/14DAP1.357920.694

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.798920.036

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.965920.71
Mature Green Tomato/Ripe Tomato1.414060.478
Immature Eggplant/Mature Eggplant1.042890.379
Ripe Pepper/Ripe Tomato2.722750.256
Mature Eggplant/Ripe Tomato2.584710.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.948211
12-2/M820.98753
12-4/M820.625140.282
1-3/M82N/AN/A
2-1-1/M820.72373
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.19371
4-3-2/M820.801611
4-3/M821.036781
5-3/M820.989921
6-2/M82N/AN/A
6-3/M821.16541
7-1/M820.86671
7-2/M821.00058
9-3-2/M820.94571

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.694870.321
IL2-6/WTpooled2.211010.409
IL7-5/WTpooled1.219861
IL7-3/WTpooled0.582650.294
IL12-4/WTpooled1.597610.839
IL1-4/WTpooled1.13181
WT/WTpooled1.036231

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.899280.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.07860.921
DC3000/delta hrp 6h1.046461
DC3000/delta hrp 12h1.127191
DC3000/delta hrp 24h1.309630.065

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.053130.384
DC3000 delta B/DC3000 delta AB1.009161

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.195231
Exp 60h1.070511

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99808
Var 0h0.99421
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNI1.56266

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.081930.292
transgenic ySAMdc/azygous control (breaker)1.010851
transgenic ySAMdc/azygous control (red)0.936991

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.995280.757

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.861250.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.983281
Manapal/WT (break)0.954741
Manapal/WT (red)1.004711