Expression of 1-1-4.2.6.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.940670.671
27DAP/17DAP0.899880.766
39DAP/27DAP1.182580.262
41DAP/39DAP1.476520.619
42DAP/41DAP1.160430.899
43DAP/42DAP1.3430.505
47DAP/43DAP1.50820.216
52DAP/47DAP1.125770.915
57DAP/52DAP1.674860.902

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.916610.254
17DAP/reference1.045240.546
27DAP/reference1.011120.981
39DAP/reference1.007180.857
41DAP/reference1.155910.171
42DAP/reference0.91280.075
43DAP/reference1.004791
47DAP/reference1.0640.885
52DAP/reference0.865530.152
57DAP/reference0.907580.056

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.940440.542
27DAP/17DAP1.160190.537
39DAP/27DAP0.910490.419
41DAP/39DAP0.822790.299
42DAP/41DAP0.971790.746
43DAP/42DAP0.863810.415
47DAP/43DAP0.932630.781
52DAP/47DAP1.005190.93
57DAP/52DAP0.889440.551
57DAP/7DAP1.276051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92890.326
17DAP/reference1.063550.896
27DAP/reference0.889710.125
39DAP/reference1.075910.436
41DAP/reference1.181980.416
42DAP/reference1.019820.612
43DAP/reference0.868360.126
47DAP/reference0.936740.504
52DAP/reference1.237640.352
57DAP/reference1.033490.799

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.140870.355
17DAP/reference1.27770.007
27DAP/reference1.063180.917
39DAP/reference1.081590.477
41DAP/reference0.969970.364
42DAP/reference0.977230.482
43DAP/reference1.199040.368
47DAP/reference1.075310.482
52DAP/reference1.110470.114
57DAP/reference1.431510.032

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.325920.051
17DAP/reference1.113150.518
27DAP/reference0.970870.539
39DAP/reference0.909690.179
41DAP/reference0.995620.754
42DAP/reference0.988530.816
43DAP/reference1.031221
47DAP/reference1.049730.73
52DAP/reference0.863520.319
57DAP/reference0.899360.229

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.939291
26DAP/20DAP0.56212
34DAP/26DAP0.610850.309
51DAP/34DAP0.51147
52DAP/51DAPN/AN/A
53DAP/52DAP1.112220.83
55DAP/53DAP0.772790.065
57DAP/55DAP0.72960.532
62DAP/57DAP1.362550.515
68DAP/62DAP0.869010.668
68DAP/14DAP2.29440.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.06710.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato3.942660.166
Immature Eggplant/Mature Eggplant1.827920.05
Ripe Pepper/Ripe Tomato0.18815
Mature Eggplant/Ripe Tomato0.46673

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.13367
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.222390.405
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.044811
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.9361
7-2/M820.80503
9-3-2/M821.10128

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.01331
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.897010.418
IL12-4/WTpooled0.98891
IL1-4/WTpooled0.73341
WT/WTpooled0.993871

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.770030.209

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.11020.583
DC3000/delta hrp 6h2.1753
DC3000/delta hrp 12h1.197851
DC3000/delta hrp 24h0.945420.618

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.44834

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.061541
Exp 36h1.073920.693
Exp 60h1.085170.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.046561
Var 0h1.036740.98
Var 12h I row2-row11.566410.379
Var 12h NI row2-row10.921510.906
Var 36h I row2-row10.704360.374
Var 36h NI row2-row10.592390.706
Var 60h I row2-row10.718540.292
Var 60h NI row2-row11.023750.904
Time course 0hI-0hNI1.344280.246
Time course 12hI-12hNI1.009711
Time course 36hI-36hNI0.992750.644
Time course 60hI-60hNI2.642280.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.971180.348
transgenic ySAMdc/azygous control (breaker)0.930680.49
transgenic ySAMdc/azygous control (red)0.983581

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.028230.155

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.011211

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.737121
Manapal/WT (break)0.745360.299
Manapal/WT (red)1.172981