Expression of 1-1-4.2.6.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94067 | 0.671 |
27DAP/17DAP | 0.89988 | 0.766 |
39DAP/27DAP | 1.18258 | 0.262 |
41DAP/39DAP | 1.47652 | 0.619 |
42DAP/41DAP | 1.16043 | 0.899 |
43DAP/42DAP | 1.343 | 0.505 |
47DAP/43DAP | 1.5082 | 0.216 |
52DAP/47DAP | 1.12577 | 0.915 |
57DAP/52DAP | 1.67486 | 0.902 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91661 | 0.254 |
17DAP/reference | 1.04524 | 0.546 |
27DAP/reference | 1.01112 | 0.981 |
39DAP/reference | 1.00718 | 0.857 |
41DAP/reference | 1.15591 | 0.171 |
42DAP/reference | 0.9128 | 0.075 |
43DAP/reference | 1.00479 | 1 |
47DAP/reference | 1.064 | 0.885 |
52DAP/reference | 0.86553 | 0.152 |
57DAP/reference | 0.90758 | 0.056 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94044 | 0.542 |
27DAP/17DAP | 1.16019 | 0.537 |
39DAP/27DAP | 0.91049 | 0.419 |
41DAP/39DAP | 0.82279 | 0.299 |
42DAP/41DAP | 0.97179 | 0.746 |
43DAP/42DAP | 0.86381 | 0.415 |
47DAP/43DAP | 0.93263 | 0.781 |
52DAP/47DAP | 1.00519 | 0.93 |
57DAP/52DAP | 0.88944 | 0.551 |
57DAP/7DAP | 1.27605 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9289 | 0.326 |
17DAP/reference | 1.06355 | 0.896 |
27DAP/reference | 0.88971 | 0.125 |
39DAP/reference | 1.07591 | 0.436 |
41DAP/reference | 1.18198 | 0.416 |
42DAP/reference | 1.01982 | 0.612 |
43DAP/reference | 0.86836 | 0.126 |
47DAP/reference | 0.93674 | 0.504 |
52DAP/reference | 1.23764 | 0.352 |
57DAP/reference | 1.03349 | 0.799 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14087 | 0.355 |
17DAP/reference | 1.2777 | 0.007 |
27DAP/reference | 1.06318 | 0.917 |
39DAP/reference | 1.08159 | 0.477 |
41DAP/reference | 0.96997 | 0.364 |
42DAP/reference | 0.97723 | 0.482 |
43DAP/reference | 1.19904 | 0.368 |
47DAP/reference | 1.07531 | 0.482 |
52DAP/reference | 1.11047 | 0.114 |
57DAP/reference | 1.43151 | 0.032 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32592 | 0.051 |
17DAP/reference | 1.11315 | 0.518 |
27DAP/reference | 0.97087 | 0.539 |
39DAP/reference | 0.90969 | 0.179 |
41DAP/reference | 0.99562 | 0.754 |
42DAP/reference | 0.98853 | 0.816 |
43DAP/reference | 1.03122 | 1 |
47DAP/reference | 1.04973 | 0.73 |
52DAP/reference | 0.86352 | 0.319 |
57DAP/reference | 0.89936 | 0.229 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93929 | 1 |
26DAP/20DAP | 0.56212 | |
34DAP/26DAP | 0.61085 | 0.309 |
51DAP/34DAP | 0.51147 | |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 1.11222 | 0.83 |
55DAP/53DAP | 0.77279 | 0.065 |
57DAP/55DAP | 0.7296 | 0.532 |
62DAP/57DAP | 1.36255 | 0.515 |
68DAP/62DAP | 0.86901 | 0.668 |
68DAP/14DAP | 2.2944 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0671 | 0.774 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 3.94266 | 0.166 |
Immature Eggplant/Mature Eggplant | 1.82792 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.18815 | |
Mature Eggplant/Ripe Tomato | 0.46673 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.13367 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.22239 | 0.405 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.04481 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.9361 | |
7-2/M82 | 0.80503 | |
9-3-2/M82 | 1.10128 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.0133 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.89701 | 0.418 |
IL12-4/WTpooled | 0.9889 | 1 |
IL1-4/WTpooled | 0.73341 | |
WT/WTpooled | 0.99387 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.77003 | 0.209 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.1102 | 0.583 |
DC3000/delta hrp 6h | 2.1753 | |
DC3000/delta hrp 12h | 1.19785 | 1 |
DC3000/delta hrp 24h | 0.94542 | 0.618 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.44834 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06154 | 1 |
Exp 36h | 1.07392 | 0.693 |
Exp 60h | 1.08517 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04656 | 1 |
Var 0h | 1.03674 | 0.98 |
Var 12h I row2-row1 | 1.56641 | 0.379 |
Var 12h NI row2-row1 | 0.92151 | 0.906 |
Var 36h I row2-row1 | 0.70436 | 0.374 |
Var 36h NI row2-row1 | 0.59239 | 0.706 |
Var 60h I row2-row1 | 0.71854 | 0.292 |
Var 60h NI row2-row1 | 1.02375 | 0.904 |
Time course 0hI-0hNI | 1.34428 | 0.246 |
Time course 12hI-12hNI | 1.00971 | 1 |
Time course 36hI-36hNI | 0.99275 | 0.644 |
Time course 60hI-60hNI | 2.64228 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97118 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.93068 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.98358 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02823 | 0.155 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01121 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73712 | 1 |
Manapal/WT (break) | 0.74536 | 0.299 |
Manapal/WT (red) | 1.17298 | 1 |
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