Expression of 1-1-4.2.7.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01158 | 0.961 |
27DAP/17DAP | 0.89727 | 0.686 |
39DAP/27DAP | 1.04175 | 1 |
41DAP/39DAP | 0.85505 | 0.499 |
42DAP/41DAP | 1.27989 | 0.366 |
43DAP/42DAP | 0.96067 | 0.906 |
47DAP/43DAP | 0.82473 | 0.48 |
52DAP/47DAP | 1.06953 | 0.946 |
57DAP/52DAP | 1.08691 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07765 | 0.366 |
17DAP/reference | 0.99526 | 0.904 |
27DAP/reference | 1.0189 | 0.721 |
39DAP/reference | 1.07261 | 0.098 |
41DAP/reference | 1.05224 | 0.421 |
42DAP/reference | 1.0552 | 0.08 |
43DAP/reference | 0.94432 | 0.2 |
47DAP/reference | 1.13764 | 0.003 |
52DAP/reference | 1.10913 | 0.205 |
57DAP/reference | 1.19324 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22491 | 0.129 |
27DAP/17DAP | 0.90471 | 0.648 |
39DAP/27DAP | 1.06729 | 0.779 |
41DAP/39DAP | 1.08656 | 0.876 |
42DAP/41DAP | 1.08332 | 0.947 |
43DAP/42DAP | 0.76853 | 0.033 |
47DAP/43DAP | 0.94251 | 0.764 |
52DAP/47DAP | 0.97602 | 0.907 |
57DAP/52DAP | 1.29987 | 0.262 |
57DAP/7DAP | 0.87408 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04797 | 0.857 |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.93023 | 0.045 |
39DAP/reference | 0.97359 | 0.073 |
41DAP/reference | 1.08609 | 0.121 |
42DAP/reference | 1.00059 | |
43DAP/reference | 0.88013 | 0.011 |
47DAP/reference | 1.01019 | 1 |
52DAP/reference | 0.90398 | 0.126 |
57DAP/reference | 0.99024 | 0.648 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10881 | 0.294 |
17DAP/reference | 1.17776 | 0.052 |
27DAP/reference | 1.27609 | 0.092 |
39DAP/reference | 1.15423 | 0.136 |
41DAP/reference | 1.1513 | 0.269 |
42DAP/reference | 1.08056 | 0.543 |
43DAP/reference | 1.23986 | 0.105 |
47DAP/reference | 1.01635 | 0.916 |
52DAP/reference | 1.15382 | 0.014 |
57DAP/reference | 1.08653 | 0.188 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39949 | |
17DAP/reference | 1.05528 | 0.746 |
27DAP/reference | 0.90019 | 0.337 |
39DAP/reference | 0.97293 | 0.693 |
41DAP/reference | 1.00189 | 1 |
42DAP/reference | 1.16932 | 0.4 |
43DAP/reference | 1.18125 | 0.362 |
47DAP/reference | 1.02153 | 0.901 |
52DAP/reference | 1.00649 | 0.979 |
57DAP/reference | 1.54084 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92636 | 0.89 |
26DAP/20DAP | 1.02692 | 1 |
34DAP/26DAP | 1.11011 | 0.819 |
51DAP/34DAP | 1.49504 | 0.458 |
52DAP/51DAP | 0.91373 | 1 |
53DAP/52DAP | 1.15145 | 0.868 |
55DAP/53DAP | 1.04505 | 0.938 |
57DAP/55DAP | 0.93994 | 0.748 |
62DAP/57DAP | 1.01307 | 1 |
68DAP/62DAP | 0.83755 | 0.314 |
68DAP/14DAP | 0.91551 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.49211 | 0.087 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.33083 | 0.075 |
Mature Green Tomato/Ripe Tomato | 1.54891 | 0.881 |
Immature Eggplant/Mature Eggplant | 1.18846 | 0.334 |
Ripe Pepper/Ripe Tomato | 0.89109 | 1 |
Mature Eggplant/Ripe Tomato | 0.876 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94057 | 0.944 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.10877 | |
1-3/M82 | 1.00637 | |
2-1-1/M82 | 1.16661 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.97013 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.85539 | |
4-1/M82 | 0.88757 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.95058 | 1 |
5-3/M82 | 0.98005 | 1 |
6-2/M82 | 1.1675 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.97097 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95671 | 1 |
IL2-6/WTpooled | 1.06832 | 0.788 |
IL7-5/WTpooled | 1.28822 | 0.67 |
IL7-3/WTpooled | 0.98749 | 0.418 |
IL12-4/WTpooled | 1.13834 | 0.553 |
IL1-4/WTpooled | 0.99544 | 1 |
WT/WTpooled | 1.00482 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.22365 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92487 | 1 |
DC3000/delta hrp 6h | 1.4558 | 1 |
DC3000/delta hrp 12h | 1.08472 | 1 |
DC3000/delta hrp 24h | 0.93189 | 0.564 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95227 | 1 |
DC3000 delta B/DC3000 delta AB | 0.86485 | 0.217 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.16862 | 1 |
Exp 36h | 1.78679 | 0.489 |
Exp 60h | 1.8062 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98313 | 1 |
Var 0h | 1.23557 | 0.98 |
Var 12h I row2-row1 | 0.93878 | 0.565 |
Var 12h NI row2-row1 | 1.12873 | 0.649 |
Var 36h I row2-row1 | 0.93118 | 1 |
Var 36h NI row2-row1 | 1.00324 | 1 |
Var 60h I row2-row1 | 0.73867 | 0.439 |
Var 60h NI row2-row1 | 0.90126 | 0.977 |
Time course 0hI-0hNI | 0.93728 | 0.485 |
Time course 12hI-12hNI | 1.05698 | 0.672 |
Time course 36hI-36hNI | 1.20077 | 0.006 |
Time course 60hI-60hNI | 2.57692 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98424 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.04106 | 1 |
transgenic ySAMdc/azygous control (red) | 1.05076 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92702 | 0.101 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.71962 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92581 | 1 |
Manapal/WT (break) | 1.21274 | 0.381 |
Manapal/WT (red) | 1.0008 | 0.863 |
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