Expression of 1-1-4.2.7.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.011580.961
27DAP/17DAP0.897270.686
39DAP/27DAP1.041751
41DAP/39DAP0.855050.499
42DAP/41DAP1.279890.366
43DAP/42DAP0.960670.906
47DAP/43DAP0.824730.48
52DAP/47DAP1.069530.946
57DAP/52DAP1.086910.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.077650.366
17DAP/reference0.995260.904
27DAP/reference1.01890.721
39DAP/reference1.072610.098
41DAP/reference1.052240.421
42DAP/reference1.05520.08
43DAP/reference0.944320.2
47DAP/reference1.137640.003
52DAP/reference1.109130.205
57DAP/reference1.193240.038

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.224910.129
27DAP/17DAP0.904710.648
39DAP/27DAP1.067290.779
41DAP/39DAP1.086560.876
42DAP/41DAP1.083320.947
43DAP/42DAP0.768530.033
47DAP/43DAP0.942510.764
52DAP/47DAP0.976020.907
57DAP/52DAP1.299870.262
57DAP/7DAP0.874081

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.047970.857
17DAP/referenceN/AN/A
27DAP/reference0.930230.045
39DAP/reference0.973590.073
41DAP/reference1.086090.121
42DAP/reference1.00059
43DAP/reference0.880130.011
47DAP/reference1.010191
52DAP/reference0.903980.126
57DAP/reference0.990240.648

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.108810.294
17DAP/reference1.177760.052
27DAP/reference1.276090.092
39DAP/reference1.154230.136
41DAP/reference1.15130.269
42DAP/reference1.080560.543
43DAP/reference1.239860.105
47DAP/reference1.016350.916
52DAP/reference1.153820.014
57DAP/reference1.086530.188

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.39949
17DAP/reference1.055280.746
27DAP/reference0.900190.337
39DAP/reference0.972930.693
41DAP/reference1.001891
42DAP/reference1.169320.4
43DAP/reference1.181250.362
47DAP/reference1.021530.901
52DAP/reference1.006490.979
57DAP/reference1.540840.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.926360.89
26DAP/20DAP1.026921
34DAP/26DAP1.110110.819
51DAP/34DAP1.495040.458
52DAP/51DAP0.913731
53DAP/52DAP1.151450.868
55DAP/53DAP1.045050.938
57DAP/55DAP0.939940.748
62DAP/57DAP1.013071
68DAP/62DAP0.837550.314
68DAP/14DAP0.915510.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.492110.087

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.330830.075
Mature Green Tomato/Ripe Tomato1.548910.881
Immature Eggplant/Mature Eggplant1.188460.334
Ripe Pepper/Ripe Tomato0.891091
Mature Eggplant/Ripe Tomato0.876

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.940570.944
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.10877
1-3/M821.00637
2-1-1/M821.16661
2-1/M82N/AN/A
2-6/M820.970131
3-2/M82N/AN/A
4-1-1/M820.85539
4-1/M820.88757
4-3-2/M82N/AN/A
4-3/M820.950581
5-3/M820.980051
6-2/M821.1675
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.970971
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.956711
IL2-6/WTpooled1.068320.788
IL7-5/WTpooled1.288220.67
IL7-3/WTpooled0.987490.418
IL12-4/WTpooled1.138340.553
IL1-4/WTpooled0.995441
WT/WTpooled1.004821

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.223650.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.924871
DC3000/delta hrp 6h1.45581
DC3000/delta hrp 12h1.084721
DC3000/delta hrp 24h0.931890.564

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.952271
DC3000 delta B/DC3000 delta AB0.864850.217

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.168621
Exp 36h1.786790.489
Exp 60h1.80620.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983131
Var 0h1.235570.98
Var 12h I row2-row10.938780.565
Var 12h NI row2-row11.128730.649
Var 36h I row2-row10.931181
Var 36h NI row2-row11.003241
Var 60h I row2-row10.738670.439
Var 60h NI row2-row10.901260.977
Time course 0hI-0hNI0.937280.485
Time course 12hI-12hNI1.056980.672
Time course 36hI-36hNI1.200770.006
Time course 60hI-60hNI2.576920.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.984240.362
transgenic ySAMdc/azygous control (breaker)1.041061
transgenic ySAMdc/azygous control (red)1.050760.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.927020.101

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.719620.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.925811
Manapal/WT (break)1.212740.381
Manapal/WT (red)1.00080.863