Expression of 1-1-4.2.7.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.957560.743
27DAP/17DAP0.921960.863
39DAP/27DAP1.137620.946
41DAP/39DAP0.907420.675
42DAP/41DAP0.881311
43DAP/42DAP1.426220.722
47DAP/43DAP1.032171
52DAP/47DAP1.191480.96
57DAP/52DAP0.743050.673

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.025470.814
17DAP/reference0.990930.63
27DAP/reference0.963610.24
39DAP/reference1.020020.706
41DAP/reference0.975570.667
42DAP/reference0.950120.062
43DAP/reference0.994460.861
47DAP/reference0.951210.191
52DAP/reference0.912880.162
57DAP/reference1.023040.744

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.974130.697
27DAP/17DAP1.029031
39DAP/27DAP1.159960.453
41DAP/39DAP1.035660.876
42DAP/41DAP1.037861
43DAP/42DAP0.942810.415
47DAP/43DAP0.8460.012
52DAP/47DAP1.180860.549
57DAP/52DAP1.074340.793
57DAP/7DAP1.318410.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.104520.318
17DAP/reference1.07410.971
27DAP/reference1.061260.974
39DAP/reference0.909930.264
41DAP/reference0.93210.194
42DAP/reference0.935270.275
43DAP/reference1.187670.256
47DAP/reference1.086470.595
52DAP/reference0.983110.621
57DAP/reference1.054310.468

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.98670.786
17DAP/reference1.049190.406
27DAP/reference0.915880.22
39DAP/reference0.997010.661
41DAP/reference0.939510.291
42DAP/reference1.004660.723
43DAP/reference0.982050.62
47DAP/reference0.980270.338
52DAP/reference0.978620.327
57DAP/reference1.003681

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.06970.775
17DAP/reference1.176940.311
27DAP/reference1.237590.051
39DAP/reference1.066540.365
41DAP/reference1.11640.286
42DAP/reference1.036330.979
43DAP/reference0.996290.685
47DAP/reference0.907270.161
52DAP/reference1.102390.609
57DAP/reference0.795580.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.971161
26DAP/20DAP1.35840.187
34DAP/26DAP0.992240.988
51DAP/34DAP0.9430.791
52DAP/51DAP0.986221
53DAP/52DAP0.870230.595
55DAP/53DAP1.032321
57DAP/55DAP1.073110.997
62DAP/57DAP0.856260.681
68DAP/62DAP0.924420.769
68DAP/14DAP1.007951

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.055270.855

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.83470.282
Mature Green Tomato/Ripe Tomato1.778680.015
Immature Eggplant/Mature Eggplant1.027631
Ripe Pepper/Ripe Tomato1.514651
Mature Eggplant/Ripe Tomato1.065731

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.06531
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled2.059870.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.875940.31
IL12-4/WTpooled1.053750.891
IL1-4/WTpooled0.92771
WT/WTpooled1.007431

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.013261

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.19933
DC3000/delta hrp 6h1.356391
DC3000/delta hrp 12h0.960781
DC3000/delta hrp 24h1.001841

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.000761
Exp 36h0.692240.539
Exp 60h0.702140.253

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020771
Var 0h0.969921
Var 12h I row2-row11.050910.795
Var 12h NI row2-row11.129270.649
Var 36h I row2-row11.232460.601
Var 36h NI row2-row10.867760.432
Var 60h I row2-row10.86680.582
Var 60h NI row2-row10.987381
Time course 0hI-0hNI1.046890.852
Time course 12hI-12hNI1.166720.233
Time course 36hI-36hNI1.147190.218
Time course 60hI-60hNI1.380920.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.998091
transgenic ySAMdc/azygous control (breaker)1.388890.248
transgenic ySAMdc/azygous control (red)1.311230.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007490.656

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.410870.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.732330.083
Manapal/WT (break)1.157771
Manapal/WT (red)0.924950.424