Expression of 1-1-4.2.7.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95756 | 0.743 |
27DAP/17DAP | 0.92196 | 0.863 |
39DAP/27DAP | 1.13762 | 0.946 |
41DAP/39DAP | 0.90742 | 0.675 |
42DAP/41DAP | 0.88131 | 1 |
43DAP/42DAP | 1.42622 | 0.722 |
47DAP/43DAP | 1.03217 | 1 |
52DAP/47DAP | 1.19148 | 0.96 |
57DAP/52DAP | 0.74305 | 0.673 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02547 | 0.814 |
17DAP/reference | 0.99093 | 0.63 |
27DAP/reference | 0.96361 | 0.24 |
39DAP/reference | 1.02002 | 0.706 |
41DAP/reference | 0.97557 | 0.667 |
42DAP/reference | 0.95012 | 0.062 |
43DAP/reference | 0.99446 | 0.861 |
47DAP/reference | 0.95121 | 0.191 |
52DAP/reference | 0.91288 | 0.162 |
57DAP/reference | 1.02304 | 0.744 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97413 | 0.697 |
27DAP/17DAP | 1.02903 | 1 |
39DAP/27DAP | 1.15996 | 0.453 |
41DAP/39DAP | 1.03566 | 0.876 |
42DAP/41DAP | 1.03786 | 1 |
43DAP/42DAP | 0.94281 | 0.415 |
47DAP/43DAP | 0.846 | 0.012 |
52DAP/47DAP | 1.18086 | 0.549 |
57DAP/52DAP | 1.07434 | 0.793 |
57DAP/7DAP | 1.31841 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10452 | 0.318 |
17DAP/reference | 1.0741 | 0.971 |
27DAP/reference | 1.06126 | 0.974 |
39DAP/reference | 0.90993 | 0.264 |
41DAP/reference | 0.9321 | 0.194 |
42DAP/reference | 0.93527 | 0.275 |
43DAP/reference | 1.18767 | 0.256 |
47DAP/reference | 1.08647 | 0.595 |
52DAP/reference | 0.98311 | 0.621 |
57DAP/reference | 1.05431 | 0.468 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9867 | 0.786 |
17DAP/reference | 1.04919 | 0.406 |
27DAP/reference | 0.91588 | 0.22 |
39DAP/reference | 0.99701 | 0.661 |
41DAP/reference | 0.93951 | 0.291 |
42DAP/reference | 1.00466 | 0.723 |
43DAP/reference | 0.98205 | 0.62 |
47DAP/reference | 0.98027 | 0.338 |
52DAP/reference | 0.97862 | 0.327 |
57DAP/reference | 1.00368 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0697 | 0.775 |
17DAP/reference | 1.17694 | 0.311 |
27DAP/reference | 1.23759 | 0.051 |
39DAP/reference | 1.06654 | 0.365 |
41DAP/reference | 1.1164 | 0.286 |
42DAP/reference | 1.03633 | 0.979 |
43DAP/reference | 0.99629 | 0.685 |
47DAP/reference | 0.90727 | 0.161 |
52DAP/reference | 1.10239 | 0.609 |
57DAP/reference | 0.79558 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97116 | 1 |
26DAP/20DAP | 1.3584 | 0.187 |
34DAP/26DAP | 0.99224 | 0.988 |
51DAP/34DAP | 0.943 | 0.791 |
52DAP/51DAP | 0.98622 | 1 |
53DAP/52DAP | 0.87023 | 0.595 |
55DAP/53DAP | 1.03232 | 1 |
57DAP/55DAP | 1.07311 | 0.997 |
62DAP/57DAP | 0.85626 | 0.681 |
68DAP/62DAP | 0.92442 | 0.769 |
68DAP/14DAP | 1.00795 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05527 | 0.855 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.8347 | 0.282 |
Mature Green Tomato/Ripe Tomato | 1.77868 | 0.015 |
Immature Eggplant/Mature Eggplant | 1.02763 | 1 |
Ripe Pepper/Ripe Tomato | 1.51465 | 1 |
Mature Eggplant/Ripe Tomato | 1.06573 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.0653 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 2.05987 | 0.395 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.87594 | 0.31 |
IL12-4/WTpooled | 1.05375 | 0.891 |
IL1-4/WTpooled | 0.92771 | |
WT/WTpooled | 1.00743 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01326 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.19933 | |
DC3000/delta hrp 6h | 1.35639 | 1 |
DC3000/delta hrp 12h | 0.96078 | 1 |
DC3000/delta hrp 24h | 1.00184 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00076 | 1 |
Exp 36h | 0.69224 | 0.539 |
Exp 60h | 0.70214 | 0.253 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02077 | 1 |
Var 0h | 0.96992 | 1 |
Var 12h I row2-row1 | 1.05091 | 0.795 |
Var 12h NI row2-row1 | 1.12927 | 0.649 |
Var 36h I row2-row1 | 1.23246 | 0.601 |
Var 36h NI row2-row1 | 0.86776 | 0.432 |
Var 60h I row2-row1 | 0.8668 | 0.582 |
Var 60h NI row2-row1 | 0.98738 | 1 |
Time course 0hI-0hNI | 1.04689 | 0.852 |
Time course 12hI-12hNI | 1.16672 | 0.233 |
Time course 36hI-36hNI | 1.14719 | 0.218 |
Time course 60hI-60hNI | 1.38092 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99809 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.38889 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.31123 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00749 | 0.656 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.41087 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.73233 | 0.083 |
Manapal/WT (break) | 1.15777 | 1 |
Manapal/WT (red) | 0.92495 | 0.424 |
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