Expression of 1-1-4.2.8.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03872 | 0.919 |
27DAP/17DAP | 1.21216 | 0.849 |
39DAP/27DAP | 0.90366 | 0.594 |
41DAP/39DAP | 1.14906 | 0.597 |
42DAP/41DAP | 1.24197 | 0.786 |
43DAP/42DAP | 1.43148 | 0.726 |
47DAP/43DAP | 1.11415 | 0.889 |
52DAP/47DAP | 1.07471 | 1 |
57DAP/52DAP | 1.03037 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.802 | 0.027 |
17DAP/reference | 1.01843 | 1 |
27DAP/reference | 1.2433 | 0.037 |
39DAP/reference | 1.06695 | 0.368 |
41DAP/reference | 0.9232 | 0.201 |
42DAP/reference | 0.8967 | 0.078 |
43DAP/reference | 1.1582 | 0.03 |
47DAP/reference | 1.27546 | 0.018 |
52DAP/reference | 1.29145 | 0.088 |
57DAP/reference | 1.39302 | 0.009 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98846 | 0.782 |
27DAP/17DAP | 1.04121 | 0.909 |
39DAP/27DAP | 1.092 | 0.519 |
41DAP/39DAP | 0.99848 | 1 |
42DAP/41DAP | 1.0551 | 0.694 |
43DAP/42DAP | 1.07046 | 0.147 |
47DAP/43DAP | 0.98666 | 0.93 |
52DAP/47DAP | 1.03033 | 0.9 |
57DAP/52DAP | 1.06982 | 0.489 |
57DAP/7DAP | 1.03898 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22104 | 0.072 |
17DAP/reference | 1.13448 | 0.269 |
27DAP/reference | 1.72699 | 0.006 |
39DAP/reference | 2.04424 | 0.006 |
41DAP/reference | 1.70406 | 0.066 |
42DAP/reference | 1.75193 | 0.03 |
43DAP/reference | 1.91776 | 0.007 |
47DAP/reference | 1.59182 | 0.081 |
52DAP/reference | 2.49666 | 0.007 |
57DAP/reference | 2.58747 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94389 | 0.487 |
17DAP/reference | 0.79747 | 0.012 |
27DAP/reference | 0.91133 | 0.181 |
39DAP/reference | 0.98939 | 0.569 |
41DAP/reference | 1.07572 | 0.893 |
42DAP/reference | 1.14403 | 0.22 |
43DAP/reference | 0.93471 | 0.404 |
47DAP/reference | 1.05745 | 0.841 |
52DAP/reference | 0.93647 | 0.203 |
57DAP/reference | 1.10489 | 0.834 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76353 | 0.039 |
17DAP/reference | 0.88337 | 0.239 |
27DAP/reference | 1.10804 | 0.298 |
39DAP/reference | 1.3327 | 0.017 |
41DAP/reference | 1.2114 | 0.027 |
42DAP/reference | 1.23351 | 0.171 |
43DAP/reference | 1.13537 | 0.432 |
47DAP/reference | 1.69913 | 0.006 |
52DAP/reference | 1.39238 | 0.108 |
57DAP/reference | 1.55467 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09081 | 0.966 |
26DAP/20DAP | 0.99849 | 1 |
34DAP/26DAP | 1.00266 | 1 |
51DAP/34DAP | 1.1634 | 0.637 |
52DAP/51DAP | 1.00253 | 1 |
53DAP/52DAP | 1.01732 | 0.935 |
55DAP/53DAP | 0.8975 | 0.592 |
57DAP/55DAP | 1.07001 | 0.865 |
62DAP/57DAP | 0.86434 | 0.28 |
68DAP/62DAP | 2.87681 | 0.413 |
68DAP/14DAP | 2.08549 | 0.05 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87743 | 0.039 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.58545 | 0.143 |
Mature Green Tomato/Ripe Tomato | 0.7323 | |
Immature Eggplant/Mature Eggplant | 2.06176 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.0359 | 1 |
Mature Eggplant/Ripe Tomato | 0.54291 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.16882 | 1 |
1-1-2/M82 | 1.09685 | 1 |
12-2/M82 | 1.20797 | 0.61 |
12-4/M82 | 0.95213 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.95341 | |
2-1/M82 | 0.83059 | |
2-6/M82 | 0.90105 | 1 |
3-2/M82 | 0.97197 | |
4-1-1/M82 | 0.73088 | 1 |
4-1/M82 | 0.9152 | 0.665 |
4-3-2/M82 | 1.08436 | 0.508 |
4-3/M82 | 1.07572 | 1 |
5-3/M82 | 1.09351 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.08285 | 1 |
7-1/M82 | 1.06476 | 0.87 |
7-2/M82 | 1.10181 | 1 |
9-3-2/M82 | 1.18051 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.15768 | 1 |
IL2-6/WTpooled | 0.60436 | 0.473 |
IL7-5/WTpooled | 1.52433 | |
IL7-3/WTpooled | 0.7632 | 1 |
IL12-4/WTpooled | 1.85176 | 0.516 |
IL1-4/WTpooled | 0.52157 | 0.562 |
WT/WTpooled | 0.90559 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11911 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01504 | 0.921 |
DC3000/delta hrp 6h | 1.16468 | 1 |
DC3000/delta hrp 12h | 0.93408 | 1 |
DC3000/delta hrp 24h | 0.84224 | 0.102 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.00718 | 1 |
DC3000 delta B/DC3000 delta AB | 1.10323 | 0.377 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.84341 | 1 |
Exp 36h | 1.18092 | 1 |
Exp 60h | 1.18332 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93079 | 1 |
Var 0h | 1.16693 | 0.98 |
Var 12h I row2-row1 | 1.19964 | 0.379 |
Var 12h NI row2-row1 | 0.99589 | 1 |
Var 36h I row2-row1 | 1.01357 | 1 |
Var 36h NI row2-row1 | 1.04823 | 1 |
Var 60h I row2-row1 | 1.10051 | 1 |
Var 60h NI row2-row1 | 1.26574 | 0.586 |
Time course 0hI-0hNI | 0.92984 | 0.327 |
Time course 12hI-12hNI | 1.08505 | 0.327 |
Time course 36hI-36hNI | 1.11668 | 0.19 |
Time course 60hI-60hNI | 0.91768 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99596 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 1.30084 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.33158 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05553 | 0.421 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.61127 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.83726 | 0.088 |
Manapal/WT (break) | 1.56236 | 0.13 |
Manapal/WT (red) | 1.16728 | 0.222 |
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