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Expression of 1-1-4.2.8.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.038720.919
27DAP/17DAP1.212160.849
39DAP/27DAP0.903660.594
41DAP/39DAP1.149060.597
42DAP/41DAP1.241970.786
43DAP/42DAP1.431480.726
47DAP/43DAP1.114150.889
52DAP/47DAP1.074711
57DAP/52DAP1.030370.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.8020.027
17DAP/reference1.018431
27DAP/reference1.24330.037
39DAP/reference1.066950.368
41DAP/reference0.92320.201
42DAP/reference0.89670.078
43DAP/reference1.15820.03
47DAP/reference1.275460.018
52DAP/reference1.291450.088
57DAP/reference1.393020.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.988460.782
27DAP/17DAP1.041210.909
39DAP/27DAP1.0920.519
41DAP/39DAP0.998481
42DAP/41DAP1.05510.694
43DAP/42DAP1.070460.147
47DAP/43DAP0.986660.93
52DAP/47DAP1.030330.9
57DAP/52DAP1.069820.489
57DAP/7DAP1.038981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.221040.072
17DAP/reference1.134480.269
27DAP/reference1.726990.006
39DAP/reference2.044240.006
41DAP/reference1.704060.066
42DAP/reference1.751930.03
43DAP/reference1.917760.007
47DAP/reference1.591820.081
52DAP/reference2.496660.007
57DAP/reference2.587470.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.943890.487
17DAP/reference0.797470.012
27DAP/reference0.911330.181
39DAP/reference0.989390.569
41DAP/reference1.075720.893
42DAP/reference1.144030.22
43DAP/reference0.934710.404
47DAP/reference1.057450.841
52DAP/reference0.936470.203
57DAP/reference1.104890.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.763530.039
17DAP/reference0.883370.239
27DAP/reference1.108040.298
39DAP/reference1.33270.017
41DAP/reference1.21140.027
42DAP/reference1.233510.171
43DAP/reference1.135370.432
47DAP/reference1.699130.006
52DAP/reference1.392380.108
57DAP/reference1.554670.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.090810.966
26DAP/20DAP0.998491
34DAP/26DAP1.002661
51DAP/34DAP1.16340.637
52DAP/51DAP1.002531
53DAP/52DAP1.017320.935
55DAP/53DAP0.89750.592
57DAP/55DAP1.070010.865
62DAP/57DAP0.864340.28
68DAP/62DAP2.876810.413
68DAP/14DAP2.085490.05

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.877430.039

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.585450.143
Mature Green Tomato/Ripe Tomato0.7323N/A
Immature Eggplant/Mature Eggplant2.061760.05
Ripe Pepper/Ripe Tomato1.03591
Mature Eggplant/Ripe Tomato0.542910.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.168821
1-1-2/M821.096851
12-2/M821.207970.61
12-4/M820.952131
1-3/M82N/AN/A
2-1-1/M820.95341N/A
2-1/M820.83059N/A
2-6/M820.901051
3-2/M820.97197N/A
4-1-1/M820.730881
4-1/M820.91520.665
4-3-2/M821.084360.508
4-3/M821.075721
5-3/M821.093511
6-2/M82N/AN/A
6-3/M821.082851
7-1/M821.064760.87
7-2/M821.101811
9-3-2/M821.180511

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.157681
IL2-6/WTpooled0.604360.473
IL7-5/WTpooled1.52433N/A
IL7-3/WTpooled0.76321
IL12-4/WTpooled1.851760.516
IL1-4/WTpooled0.521570.562
WT/WTpooled0.905591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.119111

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.015040.921
DC3000/delta hrp 6h1.164681
DC3000/delta hrp 12h0.934081
DC3000/delta hrp 24h0.842240.102

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.007181
DC3000 delta B/DC3000 delta AB1.103230.377

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.843411
Exp 36h1.180921
Exp 60h1.183321

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.930791
Var 0h1.166930.98
Var 12h I row2-row11.199640.379
Var 12h NI row2-row10.995891
Var 36h I row2-row11.013571
Var 36h NI row2-row11.048231
Var 60h I row2-row11.100511
Var 60h NI row2-row11.265740.586
Time course 0hI-0hNI0.929840.327
Time course 12hI-12hNI1.085050.327
Time course 36hI-36hNI1.116680.19
Time course 60hI-60hNI0.917680.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.995960.931
transgenic ySAMdc/azygous control (breaker)1.300840.248
transgenic ySAMdc/azygous control (red)1.331580.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.055530.421

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.611270.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.837260.088
Manapal/WT (break)1.562360.13
Manapal/WT (red)1.167280.222